Mycobacterium phage Terminus
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Detailed Information for Phage Terminus
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByCamille Ocampo
Year Found2014
Location FoundLos Angeles, CA USA
Finding InstitutionUniversity of California, Los Angeles
ProgramUnavailable
From enriched soil sample?Yes
Isolation Temperature35°C
GPS Coordinates34.0675 N, 118.45444 W Map
Discovery NotesPhage Terminus was isolated from soil collected from a potted palm tree plant in Los Angeles, CA. Phage Terminus was isolated, characterized and annotated by teams BLAST from the Phage (Jenny Kan, Kevin Louie, Camille Ocampo) and Hakuna Maphagea (Tracy De los Santos, Benjamin Lopez). Instructor: Giorgia Pirino. TA: Rocky Ng. Annotation was quality checked by Stella Joh.
Naming NotesTerminus is the name of the Roman god of boundaries. It also means the "end of the line" for transportation routes. In the popular TV show The Walking Dead, Terminus is the name of a survivor camp of cannibals housed in a railway terminal station.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedFeb 16, 2015
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage10582
Genome length (bp)76169
Character of genome ends3' Sticky Overhang
Overhang Length9 bases
Overhang SequenceCGCTTGTCA
GC Content63.1%
Fasta file available?Yes: Download fasta file
Characterization
ClusterE
Subcluster--
Other Cluster Members
Plaque NotesPlaques were mostly clear, and ranged in diameter from 2-4 mm, averaging 3 mm
MorphotypeSiphoviridae
Final annotation complete?No
Number of Genes142
Number of tRNAs2
Has been Phamerated?Yes
Gene List

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Terminus_1

Terminus_2

Terminus_3

Terminus_4

Terminus_5
(terminase, small subunit)

Terminus_6

Terminus_7

Terminus_8
(terminase, large subunit)

Terminus_9

Terminus_10
(portal protein)

Terminus_11
(capsid maturation protease)

Terminus_12
(major capsid protein)

Terminus_13
(head-to-tail connector protein)

Terminus_14
(head-to-tail connector protein)

Terminus_15
(head-to-tail connector protein)

Terminus_16
(head-to-tail connector protein)

Terminus_17
(head-to-tail connector protein)

Terminus_18
(major tail protein)

Terminus_19

Terminus_20
(tail assembly chaperone)

Terminus_21
(tail assembly chaperone)

Terminus_22
(tape measure protein)

Terminus_23
(minor tail protein)

Terminus_24
(minor tail protein)

Terminus_25
(minor tail protein)

Terminus_26
(minor tail protein)

Terminus_27
(minor tail protein, D-ala-D-ala carboxypeptidase)

Terminus_28
(minor tail protein)

Terminus_29

Terminus_30
(helix-turn-helix DNA binding domain)

Terminus_31

Terminus_32
(lysin A)

Terminus_33
(holin)

Terminus_34

Terminus_35
(lysin B)

Terminus_36

Terminus_37
(NrdH glutaredoxin)

Terminus_38
(Lsr2 DNA bridging protein)

Terminus_39

Terminus_40

Terminus_41

Terminus_42

Terminus_43

Terminus_44

Terminus_45

Terminus_46

Terminus_47

Terminus_48

Terminus_49

Terminus_50

Terminus_51

Terminus_52

Terminus_53
(membrane domain protein)

Terminus_54
(integrase, (y-int))

Terminus_55

Terminus_56

Terminus_57
(immunity repressor)

Terminus_58

Terminus_59

Terminus_60
(pentapeptide repeat protein)

Terminus_61

Terminus_62

Terminus_63

Terminus_64

Terminus_65

Terminus_66

Terminus_67
(exonuclease)

Terminus_68

Terminus_69

Terminus_70

Terminus_71

Terminus_72
(ssdna binding protien, ERF family)

Terminus_73

Terminus_74

Terminus_75

Terminus_76

Terminus_77

Terminus_78

Terminus_79

Terminus_80
(HNH endonuclease)

Terminus_81

Terminus_82

Terminus_83

Terminus_84
(DnaB dsDNA helicase)

Terminus_85

Terminus_86
(Whib family transcription factor)

Terminus_87

Terminus_88

Terminus_89
(holliday junction resolvase)

Terminus_90

Terminus_91
(polynucleotide kinase)

Terminus_92

Terminus_93

Terminus_94
(RNA ligase)

Terminus_95
(helix-turn-helix DNA binding domain)

Terminus_96
(WhiB family transcription factor)

Terminus_97

Terminus_98

Terminus_99

Terminus_100

Terminus_101

Terminus_102
(DNA methylase)

Terminus_103
(ssDNA binding protein)

Terminus_104
(ClpP protease)

Terminus_105

Terminus_106

Terminus_107

Terminus_108
(helix-turn-helix DNA binding protein)

Terminus_109
(HNH endonuclease)

Terminus_112

Terminus_113

Terminus_114

Terminus_115

Terminus_116
(DnaQ exonuclease (DNA polymerase III subunit))

Terminus_117

Terminus_118
(RecA DNA recombinase)

Terminus_119

Terminus_120

Terminus_121

Terminus_122

Terminus_123

Terminus_124

Terminus_125

Terminus_126

Terminus_127

Terminus_128

Terminus_129

Terminus_130

Terminus_131
(helix-turn-helix DNA binding domain)

Terminus_132

Terminus_133

Terminus_134

Terminus_135

Terminus_136

Terminus_137

Terminus_138

Terminus_139

Terminus_140

Terminus_141

Terminus_142

Terminus_143

Terminus_144

Terminus_145

Terminus_146

Terminus_147

Terminus_148

Terminus_149

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMF919535
Refseq NumberNone yet
Available Files
Plaque PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload