Mycobacterium phage Mindy
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Detailed Information for Phage Mindy
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByPriyanga Selvakumar
Year Found2014
Location FoundPittsburgh, PA USA
Finding InstitutionUniversity of Pittsburgh
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?No
Isolation TemperatureNot entered
GPS Coordinates40.444722 N, 79.952778 W Map
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 19, 2015
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage4365
Genome length (bp)75796
Character of genome ends3' Sticky Overhang
Overhang Length9 bp
Overhang SequenceCGCTTGTCA
GC Content63.0%
Fasta file available?Yes: Download fasta file
Characterization
ClusterE
Subcluster--
Other Cluster Members
Plaque NotesAsymmetric circular plaques with cloudy haloes in the center and diameter of 1-4mm.
MorphotypeSiphoviridae
Final annotation complete?No
Has been Phamerated?Yes
Gene List

Click to View

Mindy_1

Mindy_2

Mindy_3

Mindy_4

Mindy_5

Mindy_6
(terminase small subunit)

Mindy_7

Mindy_8

Mindy_9
(terminase large subunit)

Mindy_10

Mindy_11
(portal)

Mindy_12
(capsid maturation protease)

Mindy_13
(major capsid protein)

Mindy_14
(head to tail connectors)

Mindy_15
(head to tail connectors)

Mindy_16
(head to tail connectors)

Mindy_17
(head to tail connectors)

Mindy_18
(head to tail connectors)

Mindy_19
(major tail subunit)

Mindy_20
(tail assembly chaperone)

Mindy_21
(tail assembly chaperone)

Mindy_22
(tapemeasure)

Mindy_23
(minor tail protein)

Mindy_24
(minor tail protein)

Mindy_25
(minor tail protein)

Mindy_26
(minor tail protein)

Mindy_27
(minor tail protein, D-ala-D-ala-carboxypeptidase)

Mindy_28
(minor tail protein)

Mindy_29

Mindy_30

Mindy_31

Mindy_32
(LysA)

Mindy_33
(holin)

Mindy_34

Mindy_35
(LysB)

Mindy_36

Mindy_37
(glutaredoxin)

Mindy_38

Mindy_39

Mindy_40
(Lsr2)

Mindy_41

Mindy_42

Mindy_43

Mindy_44

Mindy_45

Mindy_46

Mindy_47

Mindy_48

Mindy_49

Mindy_50

Mindy_51
(Integrase (Y-int))

Mindy_52

Mindy_53

Mindy_54
(immunity repressor)

Mindy_55

Mindy_56

Mindy_57
(pentapeptide repeat protein)

Mindy_58

Mindy_59

Mindy_60

Mindy_61

Mindy_62

Mindy_63

Mindy_64

Mindy_65

Mindy_66

Mindy_67

Mindy_68
(ERF)

Mindy_69

Mindy_70

Mindy_71

Mindy_72

Mindy_73

Mindy_74

Mindy_75

Mindy_76
(HNH endonuclease)

Mindy_77

Mindy_78

Mindy_79

Mindy_80
(DnaB Helicase)

Mindy_81

Mindy_82
(WhiB)

Mindy_83

Mindy_84

Mindy_85

Mindy_86

Mindy_87
(polynucleotide kinase)

Mindy_88

Mindy_89

Mindy_90
(RNA ligase)

Mindy_91

Mindy_92
(WhiB)

Mindy_93

Mindy_94

Mindy_95

Mindy_96

Mindy_97

Mindy_98
(DNA methylase)

Mindy_99
(single stranded DNA binding protein)

Mindy_100
(ClpP protease)

Mindy_101

Mindy_102

Mindy_103

Mindy_104

Mindy_105
(HNH endonuclease)

Mindy_108

Mindy_109

Mindy_110
(hydrolase)

Mindy_111

Mindy_112

Mindy_113
(DnaQ-like exonuclease)

Mindy_114

Mindy_115

Mindy_116

Mindy_117

Mindy_118
(RecA)

Mindy_119

Mindy_120

Mindy_121

Mindy_122

Mindy_123

Mindy_124

Mindy_125

Mindy_126

Mindy_127

Mindy_128

Mindy_129

Mindy_130

Mindy_131

Mindy_132

Mindy_133

Mindy_134

Mindy_135

Mindy_136

Mindy_137

Mindy_138

Mindy_139

Mindy_140

Mindy_141

Mindy_142

Mindy_143

Mindy_144

Mindy_145

Mindy_146

Mindy_147

Mindy_148

Mindy_149

Publication Info
Uploaded to GenBank?Yes
GenBank AccessionKR080204
Refseq NumberNone yet
Published in PaperPope WH et al 2015, Genome Announcements
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
EM PictureDownload
Final DNAMaster FileDownload