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Mycobacterium phage Pharsalus
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Detailed Information for Phage Pharsalus
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Former namesProphagus
Found ByAli Ahmed
Year Found2012
Location FoundPhiladelphia, PA U.S.A.
Finding InstitutionSaint Joseph's University
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS Coordinates39.971822 N, 75.197344 W Map
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 6, 2014
Sequencing FacilityNC State Genomic Sciences Laboratory
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage2161
Genome length (bp)75779
Character of genome ends3' Sticky Overhang
Overhang Length9 bases
Overhang SequenceCGCTTGTCA
GC Content63.0%
Fasta file available?Yes: Download fasta file
Characterization
ClusterE
Subcluster--
Other Cluster Members
MorphotypeSiphoviridae
Final annotation complete?No
Has been Phamerated?Yes
Gene List

Click to View

Pharsalus_1

Pharsalus_2

Pharsalus_3

Pharsalus_4

Pharsalus_5

Pharsalus_6
(Terminase, small subunit)

Pharsalus_7

Pharsalus_8

Pharsalus_9
(Terminase, large subunit)

Pharsalus_10

Pharsalus_11
(portal protein)

Pharsalus_12
(capsid maturation protease)

Pharsalus_13
(major capsid protein)

Pharsalus_14

Pharsalus_15
(head-to-tail connector protein)

Pharsalus_16
(head-to-tail connector protein)

Pharsalus_17

Pharsalus_18

Pharsalus_19
(Major tail protein)

Pharsalus_20

Pharsalus_21
(tail assembly chaperone)

Pharsalus_22
(tail assembly chaperone)

Pharsalus_23
(tape measure protein)

Pharsalus_24
(minor tail protein)

Pharsalus_25
(minor tail protein)

Pharsalus_26
(minor tail protein)

Pharsalus_27
(minor tail protein)

Pharsalus_28
(minor tail protein, D-ala D-ala carboxypeptidase)

Pharsalus_29

Pharsalus_30

Pharsalus_31
(helix-turn-helix DNA binding domain)

Pharsalus_32

Pharsalus_33
(lysin A)

Pharsalus_34
(holin)

Pharsalus_35

Pharsalus_36
(lysin B)

Pharsalus_37

Pharsalus_38
(NrdH glutaredoxin)

Pharsalus_39
(Lsr2 DNA bridging protein)

Pharsalus_40

Pharsalus_41

Pharsalus_42

Pharsalus_43

Pharsalus_44

Pharsalus_45

Pharsalus_46

Pharsalus_47

Pharsalus_48

Pharsalus_49

Pharsalus_50
(integrase, (Y-int))

Pharsalus_51

Pharsalus_52

Pharsalus_53
(immunity repressor)

Pharsalus_54

Pharsalus_55

Pharsalus_56
(pentapeptide repeat protein)

Pharsalus_57

Pharsalus_58

Pharsalus_59

Pharsalus_60

Pharsalus_61

Pharsalus_62

Pharsalus_63

Pharsalus_64

Pharsalus_65

Pharsalus_66
(ssDNA binding protein, ERF family)

Pharsalus_67

Pharsalus_68

Pharsalus_69

Pharsalus_70

Pharsalus_71

Pharsalus_72

Pharsalus_73

Pharsalus_74
(HNH endonuclease)

Pharsalus_75

Pharsalus_76

Pharsalus_77

Pharsalus_78
(DnaB dsDNA helicase)

Pharsalus_79

Pharsalus_80

Pharsalus_81

Pharsalus_82

Pharsalus_83

Pharsalus_84

Pharsalus_85
(polynucleotide kinase)

Pharsalus_86

Pharsalus_87

Pharsalus_88
(RNA ligase)

Pharsalus_89
(helix-turn-helix DNA binding domain)

Pharsalus_90
(WhiB family transcription factor)

Pharsalus_91

Pharsalus_92

Pharsalus_93

Pharsalus_94

Pharsalus_95

Pharsalus_96
(DNA methylase)

Pharsalus_97
(ssDNA binding protein)

Pharsalus_98
(ClpP protease)

Pharsalus_99

Pharsalus_100

Pharsalus_101

Pharsalus_102

Pharsalus_103
(HNH endonuclease)

Pharsalus_106

Pharsalus_107

Pharsalus_108
(hydrolase)

Pharsalus_109

Pharsalus_110
(DnaQ exonuclease (DNA polymerase III subunit))

Pharsalus_111

Pharsalus_112

Pharsalus_113

Pharsalus_114

Pharsalus_115
(RecA DNA recombinase)

Pharsalus_116

Pharsalus_117

Pharsalus_118

Pharsalus_119

Pharsalus_120

Pharsalus_121

Pharsalus_122

Pharsalus_123

Pharsalus_124

Pharsalus_125

Pharsalus_126

Pharsalus_127

Pharsalus_128

Pharsalus_129

Pharsalus_130

Pharsalus_131

Pharsalus_132

Pharsalus_133

Pharsalus_134

Pharsalus_135

Pharsalus_136

Pharsalus_137

Pharsalus_138

Pharsalus_139

Pharsalus_140

Pharsalus_141

Pharsalus_142

Pharsalus_143

Pharsalus_144

Submitted Annotation in DNA Master FormatDownload
Submitted Minimal DNA Master FileDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionKX611831
Refseq NumberNone yet
Published in PaperPope, Bowman, Russell, et al 2015, eLIFE
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
EM PictureDownload
Final DNAMaster FileDownload
GenBank File for PhameratorDownload