Mycobacterium phage Kimchi
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Detailed Information for Phage Kimchi
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByKhanh Nguyen
Year Found2016
Location FoundDurham, NC United States
Finding InstitutionDurham Technical Community College
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation Temperature72°C
GPS Coordinates35.985611 N, 78.989778 W Map
Discovery NotesThe soil sample was taken from a veggie garden near vegetable and fruit waste. The soil was a bit moist and enriched. I took the soil sample about 9 inches below the surface. It was a sunny day.
Naming NotesMy mother's name.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedDec 13, 2016
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Genome length (bp)75829
Character of genome endsUnknown
Overhang Length9 bases
Overhang SequenceCGCTTGTCA
GC Content62.9%
Fasta file available?Yes: Download fasta file
Characterization
ClusterE
Subcluster--
Cluster Life CycleTemperate
Other Cluster Members
Annotation StatusIn GenBank
Plaque Notes
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

Click to View

Kimchi_1

Kimchi_2

Kimchi_3

Kimchi_4

Kimchi_5

Kimchi_6
(terminase small subunit)

Kimchi_7

Kimchi_8

Kimchi_9

Kimchi_10
(terminase large subunit)

Kimchi_11

Kimchi_12
(portal protein)

Kimchi_13
(capsid maturation protease)

Kimchi_14
(major capsid protein)

Kimchi_15
(head-to-tail connector protein)

Kimchi_16
(head-to-tail connector protein)

Kimchi_17
(head-to-tail connector protein)

Kimchi_18
(head-to-tail connector protein)

Kimchi_19
(head-to-tail connector protein)

Kimchi_20
(major tail subunit)

Kimchi_21

Kimchi_22
(tail assembly chaperone)

Kimchi_23
(tail assembly chaperone)

Kimchi_24
(tape measure protein)

Kimchi_25
(minor tail protein)

Kimchi_26
(minor tail protein)

Kimchi_27
(minor tail protein)

Kimchi_28
(minor tail protein)

Kimchi_29
(minor tail protein)

Kimchi_30
(minor tail protein)

Kimchi_31

Kimchi_32
(helix turn helix DNA-binding protein)

Kimchi_33

Kimchi_34
(lysin A)

Kimchi_35
(holin)

Kimchi_36

Kimchi_37
(lysin B)

Kimchi_38

Kimchi_39
(glutaredoxin)

Kimchi_40
(DNA bridging protein)

Kimchi_41

Kimchi_42

Kimchi_43

Kimchi_44

Kimchi_45

Kimchi_46

Kimchi_47

Kimchi_48

Kimchi_49

Kimchi_50

Kimchi_51

Kimchi_52

Kimchi_53

Kimchi_54
(membrane protein)

Kimchi_55
(integrase)

Kimchi_56

Kimchi_57
(membrane protein)

Kimchi_58
(immunity repressor)

Kimchi_59

Kimchi_60
(membrane protein)

Kimchi_61
(pentapeptide repeat protein)

Kimchi_62

Kimchi_63

Kimchi_64

Kimchi_65

Kimchi_66

Kimchi_67

Kimchi_68

Kimchi_69

Kimchi_70

Kimchi_71

Kimchi_72

Kimchi_73
(ERF family ssDNA binding protein)

Kimchi_74

Kimchi_75

Kimchi_76

Kimchi_77

Kimchi_78

Kimchi_79

Kimchi_80

Kimchi_81
(HNH endonuclease)

Kimchi_82

Kimchi_83

Kimchi_84

Kimchi_85
(dsDNA helicase)

Kimchi_86

Kimchi_87
(WhiB family transcription factor)

Kimchi_88

Kimchi_89

Kimchi_90

Kimchi_91
(resolvase)

Kimchi_92
(polynucleotide kinase)

Kimchi_93

Kimchi_94
(membrane protein)

Kimchi_95
(RNA ligase)

Kimchi_96
(helix turn helix DNA-binding protein)

Kimchi_97
(WhiB family transcription factor)

Kimchi_98

Kimchi_99

Kimchi_100

Kimchi_101

Kimchi_102

Kimchi_103
(endonuclease VII)

Kimchi_104
(ssDNA binding protein)

Kimchi_105
(protease)

Kimchi_106

Kimchi_107

Kimchi_108

Kimchi_109

Kimchi_110
(HNH endonuclease)

Kimchi_113

Kimchi_114

Kimchi_115
(HNH endonuclease)

Kimchi_116

Kimchi_117

Kimchi_118
(DNA polymerase III subunit)

Kimchi_119

Kimchi_120
(DNA recombinase)

Kimchi_121

Kimchi_122

Kimchi_123

Kimchi_124

Kimchi_125

Kimchi_126

Kimchi_127

Kimchi_128

Kimchi_129

Kimchi_130

Kimchi_131

Kimchi_132
(helix turn helix DNA-binding protein)

Kimchi_133

Kimchi_134

Kimchi_135

Kimchi_136

Kimchi_137

Kimchi_138

Kimchi_139

Kimchi_140

Kimchi_141

Kimchi_142

Kimchi_143

Kimchi_144

Kimchi_145

Kimchi_146

Kimchi_147

Kimchi_148

Kimchi_149

Kimchi_150

Kimchi_151
(HNH endonuclease)

Submitted Annotation in DNA Master FormatDownload
Submitted Minimal DNA Master FileDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMG757160
Refseq NumberNone yet
Archiving Info
Archiving status Archived
SEA Lysate Titer 1.8 x 10^10 pfu/mL
Pitt Freezer Box# 38
Pitt Freezer Box Grid# A5
Available Files
Plaque PictureDownload
Final DNAMaster FileDownload
GenBank File for PhameratorDownload