Mycobacterium phage Goku
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Detailed Information for Phage Goku
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found BySarisha Harrylal
Year Found2009
Location FoundDurban, South Africa
Finding InstitutionUniversity of Kwazulu-Natal
ProgramMycobacterial Genetics Course, Durban, South Africa
From enriched soil sample?No
Isolation TemperatureNot entered
GPS Coordinates29.816519 S, 30.945196 E Map
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedMay 24, 2013
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIon Torrent Sequencing
Approximate Shotgun Coverage534
Sanger Finishing Reactions40
Genome length (bp)76483
Character of genome ends3' Sticky Overhang
Overhang Length9 bases
Overhang SequenceCGCTTGTCA
GC Content62.8%
Fasta file available?Yes: Download fasta file
Characterization
ClusterE
Subcluster--
Other Cluster Members
Plaque NotesMedium sized plaques. Clear circle in the center, turbid radiation outward.
MorphotypeSiphoviridae
Final annotation complete?No
Has been Phamerated?Yes
Gene List

Click to View

Goku_1

Goku_2

Goku_3

Goku_4

Goku_5

Goku_6
(Terminase, small subunit)

Goku_7

Goku_8

Goku_9
(Terminase, Large subunit)

Goku_10

Goku_11
(Portal)

Goku_12

Goku_13
(Capsid)

Goku_14

Goku_15

Goku_16

Goku_17

Goku_18

Goku_19
(Major Tail)

Goku_20
(Tail Assembly Chaperone)

Goku_21
(Tail Assembly Chaperone)

Goku_22
(Tapemeasure)

Goku_23
(Minor Tail)

Goku_24
(Minor Tail)

Goku_25
(Minor Tail)

Goku_26
(Minor Tail)

Goku_27
(D-Ala-D-Ala carboxypeptidase)

Goku_28

Goku_29

Goku_30

Goku_31

Goku_32
(LysA)

Goku_33
(Holin)

Goku_34

Goku_35
(LysB)

Goku_36
(NrdH)

Goku_37
(HNH domain)

Goku_38

Goku_39
(Lsr2)

Goku_40

Goku_41

Goku_42

Goku_43

Goku_44

Goku_45

Goku_46

Goku_47

Goku_48

Goku_49

Goku_50
(Integrase)

Goku_51

Goku_52

Goku_53

Goku_54

Goku_55

Goku_56
(Pentapeptide repeat)

Goku_57

Goku_58

Goku_59

Goku_60

Goku_61

Goku_62

Goku_63

Goku_64

Goku_65

Goku_66

Goku_67
(Erf)

Goku_68

Goku_69

Goku_70

Goku_71

Goku_72

Goku_73

Goku_74

Goku_75

Goku_76

Goku_77

Goku_78

Goku_79
(DnaB-like helicase)

Goku_80

Goku_81
(HNH domain)

Goku_82

Goku_83

Goku_84

Goku_85

Goku_86

Goku_87
(Pnk)

Goku_88

Goku_89

Goku_90
(RNA ligase)

Goku_91

Goku_92
(WhiB)

Goku_93

Goku_94

Goku_95

Goku_96

Goku_97

Goku_98
(DNA methylase)

Goku_99
(ssDNA binding domain)

Goku_100
(Clp protease)

Goku_101

Goku_102

Goku_103

Goku_104

Goku_105

Goku_108

Goku_109

Goku_110

Goku_111

Goku_112

Goku_113
(DnaQ-like)

Goku_114

Goku_115
(RecA)

Goku_116

Goku_117

Goku_118

Goku_119

Goku_120

Goku_121

Goku_122

Goku_123

Goku_124

Goku_125

Goku_126
(HTH binding domain)

Goku_127

Goku_128

Goku_129

Goku_130

Goku_131

Goku_132

Goku_133

Goku_134

Goku_135

Goku_136

Goku_137

Goku_138

Goku_139

Goku_140

Goku_141

Goku_142

Goku_143

Goku_144

Goku_145

Publication Info
Uploaded to GenBank?Yes
GenBank AccessionKF416343
Refseq NumberNC_022085
Published in PaperPope, Bowman, Russell, et al 2015, eLIFE
Available Files
Plaque PictureDownload
EM PictureDownload