| Detailed Information for Phage Breeniome |
| Discovery Information |
| Isolation Host | Mycobacterium smegmatis mc²155 |
| Found By | Sabreen Afzal |
| Year Found | 2011 |
| Location Found | Jericho, NY USA |
| Finding Institution | CUNY, Queens College |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | Yes |
| Isolation Temperature | Not entered |
| GPS Coordinates | 40.779001 N, 73.53291 W Map |
| Discovery Notes | Dug from three inches to the grass's dirt from the backyard of a house.
The soil was moist and cool at touch, not clumped together.
The roots of the grass were visible in the soil samples.
The grass from which the soil was taken was rocky. |
| Sequencing Information |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Jan 29, 2012 |
| Approximate Shotgun Coverage | 144 |
| Genome length (bp) | 154434 |
| Character of genome ends | Circularly Permuted |
| GC Content | 64.8% |
| Fasta file available? | Yes: Download fasta file |
| Characterization |
| Cluster | C |
| Subcluster | C1 |
| Cluster Life Cycle | Lytic |
| Other Cluster Members |
|
| Annotating Institution | Unknown or unassigned |
| Annotation Status | In GenBank |
| Plaque Notes | Size is less than one millimeter. Clear plaques (probably lytic growth). |
| Morphotype | Myoviridae |
| Number of Genes | 237 |
| Number of tRNAs | 32 |
| Number of tmRNAs | 1 |
| Has been Phamerated? | Yes |
| Gene List |
|
| Publication Info |
| Uploaded to GenBank? | Yes |
| GenBank Accession | KF006817 |
| Refseq Number | None yet |
| Published in Paper | Pope, Bowman, Russell, et al 2015, eLIFE: Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity |
| Archiving Info |
| Archiving status |
Archived |
| SEA Designator |
2011CUNYbreeniomeSA |
| Pitt Freezer Box# |
23 |
| Pitt Freezer Box Grid# |
60 |
| Available Files |
| Plaque Picture | Download |
| Restriction Digest Picture | Download |
