Mycobacterium phage Shifa
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Detailed Information for Phage Shifa
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByShazia Mansoor
Year Found2018
Location FoundDurban, South Africa
Finding InstitutionUniversity of Kwazulu-Natal
ProgramMycobacterial Genetics Course, Durban, South Africa
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS Coordinates29.866157 S, 30.981736 E Map
Discovery NotesThe soil sample was collected from the side of the entrance to F Block, University of KwaZulu-Natal, Westville.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJun 28, 2019
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage430
Genome length (bp)154859
Character of genome endsCircularly Permuted
GC Content64.6%
Fasta file available?Yes: Download fasta file
Characterization
ClusterC
SubclusterC1
Cluster Life CycleLytic
Other Cluster Members

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Ading (C1)

Adlitam (C1)

Alice (C1)

Amataga (C1)

ArcherS7 (C1)

Astraea (C1)

Atlantean (C1)

Audrick (C1)

Ava3 (C1)

BackyardAgain (C1)

BadAgartude (C1)

BananaFence (C1)

Bangla1971 (C1)

Basquiat (C1)

BeanWater (C1)

Bigswole (C1)

Bipolarisk (C1)

Blackbrain (C1)

Bonray (C1)

Bread (C1)

Breeniome (C1)

Burrough (C1)

Bxz1 (C1)

Cactojaque (C1)

Cali (C1)

Cane17 (C1)

Catera (C1)

Chargie21 (C1)

CharlieB (C1)

ChaylaJr (C1)

ChickenPhender (C1)

Colt (C1)

Daffodil (C1)

Dandelion (C1)

Darko (C1)

Delilah (C1)

Derek (C1)

Dietrick (C1)

Drazdys (C1)

DrPhinkDaddy (C1)

DTDevon (C1)

EasyJones (C1)

EmmaElysia (C1)

EmToTheThree (C1)

Erdmann (C1)

ErnieJ (C1)

Essence (C1)

ET08 (C1)

Ewok (C1)

Flabslab (C1)

Fludd (C1)

FoxtrotP1 (C1)

FrayBell (C1)

FudgeTart (C1)

Gabriel (C1)

Ghost (C1)

Gizmo (C1)

Grungle (C1)

Guwapp (C1)

HyRo (C1)

InigoMontoya (C1)

InterFolia (C1)

Iota (C1)

Janiyra (C1)

Jaygup (C1)

Jessibeth14 (C1)

JPickles (C1)

JustHall (C1)

Kamryn (C1)

Kboogie (C1)

Khaleesi (C1)

Koguma (C1)

Latch (C1)

LifeSavor (C1)

LinStu (C1)

Littleton (C1)

Loanshark (C1)

LolaVinca (C1)

LRRHood (C1)

Lukilu (C1)

Mangeria (C1)

McWolfish (C1)

Megamind (C1)

Melpomini (C1)

MikeLiesIn (C1)

Momo (C1)

MoMoMixon (C1)

Morizzled23 (C1)

Naija (C1)

Napoleon13 (C1)

Nappy (C1)

Nidhogg (C1)

NoodleTree (C1)

Norm (C1)

NuevoMundo (C1)

ParkTD (C1)

Patter (C1)

Phlegm (C1)

Phox (C1)

Phusco (C1)

Pier (C1)

Pinkcreek (C1)

Pio (C1)

Pivoine (C1)

Pleione (C1)

QBert (C1)

Quasimodo (C1)

Rabinovish (C1)

Rahel (C1)

Rizal (C1)

RoMag (C1)

Ronan (C1)

Roots515 (C1)

Salacia (C1)

Sauce (C1)

ScottMcG (C1)

Sebata (C1)

Shaqnato (C1)

Shelob (C1)

ShiaLabeouf (C1)

Shifa (C1)

Shnickers (C1)

Shrimp (C1)

SmallFry (C1)

Specks (C1)

Sprinklers (C1)

Spud (C1)

StephanieG (C1)

Stubby (C1)

Teardrop (C1)

TinyTim (C1)

Tonenili (C1)

Tortoise16 (C1)

Trinitium (C1)

Turret (C1)

Tyke (C1)

ValleyTerrace (C1)

Wally (C1)

Willis (C1)

YoungMoneyMata (C1)

Yucca (C1)

Zalkecks (C1)

Zeenon (C1)

ZygoTaiga (C1)

Myrna (C2)

Phabba (C2)

Annotating InstitutionUniversity of Pittsburgh
Annotation StatusIn GenBank
MorphotypeMyoviridae
Has been Phamerated?Yes
Gene List

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Shifa_1

Shifa_2

Shifa_3
(nucleotidyltransferase with HNH endonuclease)

Shifa_4

Shifa_5

Shifa_6

Shifa_7

Shifa_8

Shifa_9

Shifa_10

Shifa_11

Shifa_12

Shifa_13

Shifa_14

Shifa_15

Shifa_16

Shifa_17

Shifa_18

Shifa_19

Shifa_20

Shifa_21

Shifa_22
(HNH endonuclease)

Shifa_23

Shifa_24

Shifa_25

Shifa_26
(membrane protein, Band-7-like)

Shifa_27

Shifa_28

Shifa_29

Shifa_30

Shifa_31

Shifa_32
(DNA binding, HU-like domain)

Shifa_33

Shifa_34

Shifa_35

Shifa_36

Shifa_37

Shifa_38

Shifa_39

Shifa_40

Shifa_41

Shifa_42

Shifa_43

Shifa_44

Shifa_45

Shifa_46

Shifa_47

Shifa_48

Shifa_49
(DNA binding protein)

Shifa_50

Shifa_51

Shifa_52

Shifa_53

Shifa_54

Shifa_55

Shifa_56
(helix-turn-helix DNA binding domain)

Shifa_57

Shifa_58

Shifa_59

Shifa_60

Shifa_61

Shifa_62

Shifa_63

Shifa_64

Shifa_65

Shifa_66

Shifa_67

Shifa_68

Shifa_69

Shifa_70

Shifa_71

Shifa_72

Shifa_77

Shifa_78

Shifa_79
(portal protein)

Shifa_80

Shifa_81

Shifa_82
(ThyX-like thymidylate synthase)

Shifa_83

Shifa_84
(RNA ligase)

Shifa_85

Shifa_86

Shifa_87

Shifa_88
(major tail protein)

Shifa_89
(Holliday junction resolvase)

Shifa_90

Shifa_91
(head fiber protein)

Shifa_92

Shifa_93

Shifa_94

Shifa_95

Shifa_96

Shifa_97

Shifa_98

Shifa_99

Shifa_100

Shifa_101

Shifa_102

Shifa_103

Shifa_104

Shifa_105

Shifa_106

Shifa_107

Shifa_108
(minor tail protein)

Shifa_109

Shifa_110

Shifa_111
(acetyltransferase)

Shifa_112

Shifa_113
(ParB-like nuclease domain)

Shifa_114

Shifa_115

Shifa_116
(tail sheath protein)

Shifa_117

Shifa_118

Shifa_119
(tail assembly chaperone)

Shifa_120
(tail assembly chaperone)

Shifa_121
(tape measure protein)

Shifa_122
(minor tail protein)

Shifa_123

Shifa_124
(minor tail protein)

Shifa_125
(minor tail protein)

Shifa_126
(minor tail protein)

Shifa_127
(minor tail protein)

Shifa_128
(baseplate wedge protein)

Shifa_129
(baseplate wedge protein)

Shifa_130
(HNH endonuclease)

Shifa_131

Shifa_132

Shifa_133

Shifa_134
(minor tail protein)

Shifa_135
(minor tail protein)

Shifa_136

Shifa_137

Shifa_138

Shifa_139

Shifa_140

Shifa_141

Shifa_142

Shifa_146

Shifa_147
(peptidyl tRNA hydrolase)

Shifa_154

Shifa_162
(HNH endonuclease)

Shifa_164
(minor tail protein, D-ala-D-ala carboxypeptidase)

Shifa_165

Shifa_178

Shifa_179

Shifa_180
(DNA helicase)

Shifa_181

Shifa_182
(DNA primase)

Shifa_183

Shifa_184
(chaperonin, DnaJ-like)

Shifa_185
(ssDNA binding protein)

Shifa_186
(DnaE-like DNA polymerase III (alpha))

Shifa_187
(RF-1 peptide chain release factor)

Shifa_188
(RecA-like DNA recombinase)

Shifa_189
(Holliday junction resolvase)

Shifa_190

Shifa_191
(HNH endonuclease)

Shifa_192
(RusA-like resolvase (endonuclease))

Shifa_193

Shifa_194

Shifa_195

Shifa_196

Shifa_197
(glycoside hydrolase)

Shifa_198

Shifa_199
(HNH endonuclease)

Shifa_200

Shifa_203

Shifa_204

Shifa_205

Shifa_206

Shifa_207

Shifa_208

Shifa_209

Shifa_210
(Ro-like RNA binding protein)

Shifa_211

Shifa_212

Shifa_213

Shifa_214

Shifa_215

Shifa_216

Shifa_217

Shifa_218
(galactosaminyltransferase)

Shifa_219
(glycosyltransferase)

Shifa_220
(galactosyltransferase)

Shifa_221
(glycosyltransferase)

Shifa_222

Shifa_223

Shifa_224

Shifa_225

Shifa_226
(lysin A)

Shifa_227
(holin)

Shifa_228
(lysin B)

Shifa_229
(terminase)

Shifa_230

Shifa_231

Shifa_232

Shifa_233

Shifa_234
(polynucleotide kinase)

Shifa_235

Shifa_236

Shifa_237
(serine/threonine kinase)

Shifa_238
(HNH endonuclease)

Shifa_239

Shifa_240
(adenylosuccinate synthetase, PurA-like)

Shifa_241

Shifa_242

Shifa_243

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMT889395
Refseq NumberNone yet
Archiving Info
Archiving status Not in Pitt Archives
Available Files
GenBank File for PhameratorDownload