Mycobacterium phage Shifa

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Detailed Information for Phage Shifa
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByShazia
Year Found2018
Location FoundDurban, South Africa
Finding InstitutionUniversity of Kwazulu-Natal
ProgramMycobacterial Genetics Course, Durban, South Africa
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS CoordinatesUnavailable
Discovery NotesThe soil sample was collected from the side of the entrance to F Block, University of KwaZulu-Natal, Westville.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJun 28, 2019
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage430
Genome length (bp)154859
Character of genome endsCircularly Permuted
GC Content64.6%
Fasta file available?Available upon entering GPS coordinates
Characterization
ClusterC
SubclusterC1
Cluster Life CycleLytic
Other Cluster Members

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Ading (C1)

Adlitam (C1)

Alice (C1)

Amataga (C1)

ArcherS7 (C1)

Astraea (C1)

Atlantean (C1)

Audrick (C1)

Ava3 (C1)

BadAgartude (C1)

Bangla1971 (C1)

Basquiat (C1)

BeanWater (C1)

Bigswole (C1)

Bipolarisk (C1)

Blackbrain (C1)

Bonray (C1)

Bread (C1)

Breeniome (C1)

Burrough (C1)

Bxz1 (C1)

Cactojaque (C1)

Cali (C1)

Cane17 (C1)

Catera (C1)

Chargie21 (C1)

CharlieB (C1)

ChickenPhender (C1)

Colt (C1)

Daffodil (C1)

Dandelion (C1)

Darko (C1)

Delilah (C1)

Derek (C1)

Dietrick (C1)

Drazdys (C1)

DrPhinkDaddy (C1)

DTDevon (C1)

EmmaElysia (C1)

EmToTheThree (C1)

Erdmann (C1)

ErnieJ (C1)

Essence (C1)

ET08 (C1)

Ewok (C1)

Flabslab (C1)

Fludd (C1)

FoxtrotP1 (C1)

FrayBell (C1)

FudgeTart (C1)

Gabriel (C1)

Ghost (C1)

Gizmo (C1)

Grungle (C1)

Guwapp (C1)

HyRo (C1)

InigoMontoya (C1)

InterFolia (C1)

Iota (C1)

Jessibeth14 (C1)

JPickles (C1)

JustHall (C1)

Kamryn (C1)

Kboogie (C1)

Khaleesi (C1)

Koguma (C1)

LifeSavor (C1)

LinStu (C1)

Littleton (C1)

Loanshark (C1)

LolaVinca (C1)

LRRHood (C1)

Lukilu (C1)

Mangeria (C1)

McWolfish (C1)

Megamind (C1)

Melpomini (C1)

MikeLiesIn (C1)

Momo (C1)

MoMoMixon (C1)

Morizzled23 (C1)

Naija (C1)

Napoleon13 (C1)

Nappy (C1)

Nidhogg (C1)

NoodleTree (C1)

Norm (C1)

NuevoMundo (C1)

ParkTD (C1)

Patter (C1)

Phlegm (C1)

Phox (C1)

Phusco (C1)

Pier (C1)

Pinkcreek (C1)

Pio (C1)

Pivoine (C1)

Pleione (C1)

QBert (C1)

Rabinovish (C1)

Rahel (C1)

Rizal (C1)

RoMag (C1)

Roots515 (C1)

Salacia (C1)

Sauce (C1)

ScottMcG (C1)

Sebata (C1)

Shaqnato (C1)

Shelob (C1)

ShiaLabeouf (C1)

Shifa (C1)

Shnickers (C1)

Shrimp (C1)

SmallFry (C1)

Specks (C1)

Sprinklers (C1)

Spud (C1)

StephanieG (C1)

Stubby (C1)

Teardrop (C1)

TinyTim (C1)

Tonenili (C1)

Tortoise16 (C1)

Trinitium (C1)

Tyke (C1)

ValleyTerrace (C1)

Wally (C1)

Willis (C1)

YoungMoneyMata (C1)

Yucca (C1)

Zalkecks (C1)

Zeenon (C1)

ZygoTaiga (C1)

Myrna (C2)

Phabba (C2)

Annotating InstitutionUniversity of Kwazulu-Natal
Annotation StatusBeing Annotated (Expected completion by 2/3/2020)
MorphotypeMyoviridae
Has been Phamerated?Yes
Gene List

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Shifa_1

Shifa_2

Shifa_3

Shifa_4

Shifa_5

Shifa_6

Shifa_7

Shifa_8

Shifa_9

Shifa_10

Shifa_11

Shifa_12

Shifa_13

Shifa_14

Shifa_15

Shifa_16

Shifa_17

Shifa_18

Shifa_19

Shifa_20

Shifa_21

Shifa_22

Shifa_23

Shifa_24

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Shifa_27

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Shifa_29

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Shifa_31

Shifa_32

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Shifa_150

Shifa_151

Shifa_158

Shifa_166

Shifa_168

Shifa_169

Shifa_181

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Shifa_184

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Shifa_211

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Shifa_221

Shifa_222

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Shifa_224

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Shifa_226

Shifa_227

Shifa_228

Shifa_229

Shifa_230

Shifa_231

Shifa_232

Shifa_233

Shifa_234

Shifa_235

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Shifa_237

Shifa_238

Shifa_239

Shifa_240

Shifa_241

Shifa_242

Shifa_243

Shifa_244

Shifa_245

Shifa_246

Shifa_247

Shifa_248

Shifa_249

Shifa_250

Shifa_251

Shifa_252

Shifa_253

Shifa_254

Shifa_255

Shifa_256

Shifa_257

Shifa_258

Shifa_259

Shifa_260

Shifa_261

Shifa_262

Shifa_263

Publication Info
Uploaded to GenBank?No
GenBank AccessionNone yet
Refseq NumberNone yet
Archiving Info
Archiving status Not in Pitt Archives