Detailed Information for Phage Yassified |
Discovery Information |
Isolation Host | Mycobacterium smegmatis mc²155 |
Found By | Owen Koetters |
Year Found | 2022 |
Location Found | Los Angeles, CA United States |
Finding Institution | University of California, Los Angeles |
Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
From enriched soil sample? | Yes |
Isolation Temperature | 35°C |
GPS Coordinates | 34.006988 N, 118.46831 W Map |
Discovery Notes | Sample was moist and in an area replete with organic waste due to domesticated dogs and rats that live in the area. Soil environment is well-shaded, densely packed with vegetables, and is thoroughly irrigated. Weather was sunny at the time of sampling.
Plated on MHA plate with 20 mM CaCl2 |
Naming Notes | By characterizing Yassified, we actively yassified it, which means to beautify or make something substantially better, which is done via isolation and through the process of visualizing the phage. |
Sequencing Information |
Sequencing Complete? | Yes |
Date Sequencing Completed | Jul 26, 2022 |
Sequencing Facility | Pittsburgh Bacteriophage Institute |
Shotgun Sequencing Method | Illumina Sequencing |
Approximate Shotgun Coverage | 167 |
Genome length (bp) | 155851 |
Character of genome ends | Circularly Permuted |
GC Content | 64.6% |
Fasta file available? | Yes: Download fasta file |
Characterization |
Cluster | C |
Subcluster | C1 |
Cluster Life Cycle | Lytic |
Other Cluster Members |
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Annotating Institution | SUNY Old Westbury |
Annotation Status | In GenBank |
Plaque Notes | Clear plaques with a diameter that ranged from 1-2mm (1.5 mm avg) |
Morphotype | Myoviridae |
Has been Phamerated? | Yes |
Gene List |
|
Submitted Annotation in DNA Master Format | Download |
Submitted Minimal DNA Master File | Download |
Author List | Download |
Annotation Cover Sheet | Download |
Publication Info |
Uploaded to GenBank? | Yes |
GenBank Accession | OR613471 |
Refseq Number | None yet |
Archiving Info |
Archiving status |
Archived |
Pitt Freezer Box# |
156 |
Pitt Freezer Box Grid# |
A3 |
Available Files |
Plaque Picture | Download |
EM Picture | Download |
GenBank File for Phamerator | Download |