Mycobacterium phage Atlantean
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Detailed Information for Phage Atlantean
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Duplicates of this PhageDoodle1
Found ByDesiree Butler
Year Found2016
Location FoundWashington, DC USA
Finding InstitutionHoward University
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS Coordinates38.920212 N, 77.01897 W Map
Discovery NotesSunny, warm, and dry day. Sample was retrieved 2 inches into soil under mulch underneath a tree on the side of Louis Stokes Library at Howard University.
Naming NotesThere was a struggle trying to isolate this wonderful phage that holds so much potential and power, just like the lost city of Atlantis.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 17, 2017
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage358
Genome length (bp)154553
Character of genome endsCircularly Permuted
GC Content64.7%
Fasta file available?Yes: Download fasta file
Characterization
ClusterC
SubclusterC1
Cluster Life CycleLytic
Other Cluster Members

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Ading (C1)

Adlitam (C1)

Alice (C1)

Amataga (C1)

ArcherS7 (C1)

Astraea (C1)

Atlantean (C1)

Audrick (C1)

Ava3 (C1)

BadAgartude (C1)

Bangla1971 (C1)

Basquiat (C1)

BeanWater (C1)

Bigswole (C1)

Bipolarisk (C1)

Blackbrain (C1)

Bonray (C1)

Bread (C1)

Breeniome (C1)

Burrough (C1)

Bxz1 (C1)

Cactojaque (C1)

Cali (C1)

Cane17 (C1)

Catera (C1)

Chargie21 (C1)

CharlieB (C1)

ChickenPhender (C1)

Colt (C1)

Daffodil (C1)

Dandelion (C1)

Darko (C1)

Delilah (C1)

Derek (C1)

Dietrick (C1)

Drazdys (C1)

DrPhinkDaddy (C1)

DTDevon (C1)

EmmaElysia (C1)

EmToTheThree (C1)

Erdmann (C1)

ErnieJ (C1)

Essence (C1)

ET08 (C1)

Ewok (C1)

Flabslab (C1)

Fludd (C1)

FoxtrotP1 (C1)

FrayBell (C1)

FudgeTart (C1)

Gabriel (C1)

Ghost (C1)

Gizmo (C1)

Grungle (C1)

Guwapp (C1)

HyRo (C1)

InigoMontoya (C1)

InterFolia (C1)

Iota (C1)

Jessibeth14 (C1)

JPickles (C1)

JustHall (C1)

Kamryn (C1)

Kboogie (C1)

Khaleesi (C1)

Koguma (C1)

LifeSavor (C1)

LinStu (C1)

Littleton (C1)

Loanshark (C1)

LolaVinca (C1)

LRRHood (C1)

Lukilu (C1)

Mangeria (C1)

McWolfish (C1)

Megamind (C1)

Melpomini (C1)

MikeLiesIn (C1)

Momo (C1)

MoMoMixon (C1)

Morizzled23 (C1)

Naija (C1)

Napoleon13 (C1)

Nappy (C1)

Nidhogg (C1)

NoodleTree (C1)

Norm (C1)

NuevoMundo (C1)

ParkTD (C1)

Patter (C1)

Phlegm (C1)

Phox (C1)

Phusco (C1)

Pier (C1)

Pinkcreek (C1)

Pio (C1)

Pivoine (C1)

Pleione (C1)

QBert (C1)

Rabinovish (C1)

Rahel (C1)

Rizal (C1)

RoMag (C1)

Roots515 (C1)

Salacia (C1)

Sauce (C1)

ScottMcG (C1)

Sebata (C1)

Shaqnato (C1)

Shelob (C1)

ShiaLabeouf (C1)

Shifa (C1)

Shnickers (C1)

Shrimp (C1)

SmallFry (C1)

Specks (C1)

Sprinklers (C1)

Spud (C1)

StephanieG (C1)

Stubby (C1)

Teardrop (C1)

TinyTim (C1)

Tonenili (C1)

Tortoise16 (C1)

Trinitium (C1)

Tyke (C1)

ValleyTerrace (C1)

Wally (C1)

Willis (C1)

YoungMoneyMata (C1)

Yucca (C1)

Zalkecks (C1)

Zeenon (C1)

ZygoTaiga (C1)

Myrna (C2)

Phabba (C2)

Annotating InstitutionUniversity of Pittsburgh
Annotation StatusIn GenBank
Plaque NotesBacteriophage Atlantean is small but powerful. It has a diameter of 1cm and is a lytic phage.
MorphotypeMyoviridae
Has been Phamerated?Yes
Gene List

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Atlantean_1

Atlantean_2

Atlantean_3
(HNH endonuclease)

Atlantean_4

Atlantean_5

Atlantean_6

Atlantean_7

Atlantean_8

Atlantean_9

Atlantean_10

Atlantean_11

Atlantean_12

Atlantean_13

Atlantean_14

Atlantean_15

Atlantean_16

Atlantean_17
(histidine triad nucleotide binding protein)

Atlantean_18

Atlantean_19

Atlantean_20

Atlantean_21

Atlantean_22

Atlantean_23

Atlantean_24

Atlantean_25

Atlantean_26

Atlantean_27

Atlantean_28

Atlantean_29

Atlantean_30

Atlantean_31
(helix-turn-helix DNA binding protein)

Atlantean_32

Atlantean_33

Atlantean_34

Atlantean_35
(ribbon-helix-helix DNA binding domain protein)

Atlantean_36

Atlantean_37

Atlantean_38

Atlantean_39

Atlantean_40

Atlantean_41

Atlantean_42

Atlantean_43

Atlantean_44

Atlantean_45

Atlantean_46

Atlantean_47

Atlantean_48

Atlantean_49

Atlantean_50

Atlantean_51

Atlantean_52

Atlantean_53

Atlantean_54
(helix-turn-helix DNA binding protein)

Atlantean_55

Atlantean_56

Atlantean_57

Atlantean_58

Atlantean_59

Atlantean_60

Atlantean_61
(helix-turn-helix DNA binding domain protein)

Atlantean_62
(helix-turn-helix DNA binding domain protein)

Atlantean_63

Atlantean_64

Atlantean_65

Atlantean_66

Atlantean_67

Atlantean_68

Atlantean_69

Atlantean_70

Atlantean_71

Atlantean_72

Atlantean_73

Atlantean_74

Atlantean_75

Atlantean_76

Atlantean_77

Atlantean_78

Atlantean_79

Atlantean_80

Atlantean_81

Atlantean_82

Atlantean_87
(methyltransferase)

Atlantean_88

Atlantean_89
(portal protein)

Atlantean_90

Atlantean_91

Atlantean_92
(ThyX-like thymidylate synthase)

Atlantean_93

Atlantean_94
(RNA ligase)

Atlantean_95
(HNH endonuclease)

Atlantean_96
(LysM domain protein)

Atlantean_97

Atlantean_98

Atlantean_99
(major capsid protein)

Atlantean_100
(capsid decoration protein)

Atlantean_101

Atlantean_102

Atlantean_103

Atlantean_104

Atlantean_105

Atlantean_106

Atlantean_107
(membrane protein)

Atlantean_108

Atlantean_109

Atlantean_110

Atlantean_111

Atlantean_112

Atlantean_113

Atlantean_114

Atlantean_115

Atlantean_116

Atlantean_117

Atlantean_118

Atlantean_119

Atlantean_120
(N-acetyltransferase)

Atlantean_121

Atlantean_122

Atlantean_123

Atlantean_124

Atlantean_125

Atlantean_126

Atlantean_127
(tail sheath protein)

Atlantean_128

Atlantean_129

Atlantean_130
(tail assembly chaperone)

Atlantean_131
(tail assembly chaperone)

Atlantean_132
(tape measure protein)

Atlantean_133
(minor tail protein)

Atlantean_134

Atlantean_135

Atlantean_136
(minor tail protein)

Atlantean_137

Atlantean_138

Atlantean_139
(baseplate wedge protein)

Atlantean_140
(baseplate wedge protein)

Atlantean_141

Atlantean_142

Atlantean_143

Atlantean_144
(minor tail protein)

Atlantean_145
(minor tail protein)

Atlantean_146

Atlantean_147

Atlantean_148

Atlantean_149

Atlantean_150

Atlantean_151

Atlantean_152

Atlantean_156

Atlantean_157
(peptidyl tRNA hydrolase)

Atlantean_171
(HNH endonuclease)

Atlantean_173
(D-ala-D-ala carboxypeptidase)

Atlantean_174

Atlantean_186

Atlantean_187
(helicase)

Atlantean_188

Atlantean_189

Atlantean_190

Atlantean_191

Atlantean_192

Atlantean_193

Atlantean_194

Atlantean_195

Atlantean_196

Atlantean_197
(thymidylate kinase)

Atlantean_198
(aminotransferase)

Atlantean_199
(RNA binding domain protein)

Atlantean_200

Atlantean_201

Atlantean_202
(DnaC-like helicase loader)

Atlantean_203
(DnaB-like dsDNA helicase)

Atlantean_204

Atlantean_205
(DNA primase)

Atlantean_206

Atlantean_207
(DnaJ-like chaperonin)

Atlantean_208
(ssDNA binding domain protein)

Atlantean_209
(DNA polymerase III (alpha))

Atlantean_210
(RF-1 peptide chain release factor)

Atlantean_211
(RecA-like DNA recombinase)

Atlantean_212
(holliday junction resolvase)

Atlantean_213

Atlantean_214
(HNH endonuclease)

Atlantean_215
(RusA-like resolvase)

Atlantean_216

Atlantean_217

Atlantean_218

Atlantean_219

Atlantean_220
(glycoside hydrolase)

Atlantean_221

Atlantean_222

Atlantean_225

Atlantean_226

Atlantean_227

Atlantean_228

Atlantean_229

Atlantean_230

Atlantean_231

Atlantean_232

Atlantean_233
(Ro-like RNA binding protein)

Atlantean_234

Atlantean_235

Atlantean_236

Atlantean_237

Atlantean_238

Atlantean_239

Atlantean_240
(galactosaminyltransferase)

Atlantean_241

Atlantean_242
(glycosyltransferase)

Atlantean_243
(galactosyltransferase)

Atlantean_244
(nicotinate ribosyltransferase)

Atlantean_245
(glycosyltransferase)

Atlantean_246

Atlantean_247

Atlantean_248

Atlantean_249

Atlantean_250
(lysin A)

Atlantean_251
(membrane protein)

Atlantean_252
(lysin B)

Atlantean_253
(terminase)

Atlantean_254

Atlantean_255

Atlantean_256

Atlantean_257

Atlantean_258
(polynucleotide kinase)

Atlantean_259

Atlantean_260
(serine/threonine kinase)

Atlantean_261

Atlantean_262

Atlantean_263
(adenylosuccinate synthetase)

Atlantean_264

Atlantean_265

Atlantean_266

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMK359362
Refseq NumberNone yet
Archiving Info
Archiving status Archived
SEA Lysate Titer 4.3x10^9pfu/ml
Pitt Freezer Box# 48
Pitt Freezer Box Grid# A7
Available Files
Final DNAMaster FileDownload
GenBank File for PhameratorDownload