Mycobacterium phage Specks
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Detailed Information for Phage Specks
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByTylia Johnson
Year Found2014
Location FoundMetairie, LA USA
Finding InstitutionXavier University of Louisiana
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Unknown
Isolation TemperatureNot entered
GPS Coordinates29.9639 N, 90.1071 W Map
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 13, 2015
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage1164
Genome length (bp)156374
Character of genome endsCircularly Permuted
GC Content64.7%
Fasta file available?Yes: Download fasta file
Characterization
ClusterC
SubclusterC1
Cluster Life CycleLytic
Other Cluster Members

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Ading (C1)

Adlitam (C1)

Alice (C1)

Amataga (C1)

ArcherS7 (C1)

Astraea (C1)

Atlantean (C1)

Audrick (C1)

Ava3 (C1)

BadAgartude (C1)

Bangla1971 (C1)

Basquiat (C1)

BeanWater (C1)

Bigswole (C1)

Bipolarisk (C1)

Blackbrain (C1)

Bonray (C1)

Bread (C1)

Breeniome (C1)

Burrough (C1)

Bxz1 (C1)

Cactojaque (C1)

Cali (C1)

Cane17 (C1)

Catera (C1)

Chargie21 (C1)

CharlieB (C1)

ChickenPhender (C1)

Colt (C1)

Daffodil (C1)

Dandelion (C1)

Darko (C1)

Delilah (C1)

Derek (C1)

Dietrick (C1)

Drazdys (C1)

DrPhinkDaddy (C1)

DTDevon (C1)

EmmaElysia (C1)

EmToTheThree (C1)

Erdmann (C1)

ErnieJ (C1)

Essence (C1)

ET08 (C1)

Ewok (C1)

Flabslab (C1)

Fludd (C1)

FoxtrotP1 (C1)

FrayBell (C1)

FudgeTart (C1)

Gabriel (C1)

Ghost (C1)

Gizmo (C1)

Grungle (C1)

Guwapp (C1)

HyRo (C1)

InigoMontoya (C1)

InterFolia (C1)

Iota (C1)

Jessibeth14 (C1)

JPickles (C1)

JustHall (C1)

Kamryn (C1)

Kboogie (C1)

Khaleesi (C1)

Koguma (C1)

LifeSavor (C1)

LinStu (C1)

Littleton (C1)

Loanshark (C1)

LolaVinca (C1)

LRRHood (C1)

Lukilu (C1)

Mangeria (C1)

McWolfish (C1)

Megamind (C1)

Melpomini (C1)

MikeLiesIn (C1)

Momo (C1)

MoMoMixon (C1)

Morizzled23 (C1)

Naija (C1)

Napoleon13 (C1)

Nappy (C1)

Nidhogg (C1)

NoodleTree (C1)

Norm (C1)

NuevoMundo (C1)

ParkTD (C1)

Patter (C1)

Phlegm (C1)

Phox (C1)

Phusco (C1)

Pier (C1)

Pinkcreek (C1)

Pio (C1)

Pivoine (C1)

Pleione (C1)

QBert (C1)

Rabinovish (C1)

Rahel (C1)

Rizal (C1)

RoMag (C1)

Roots515 (C1)

Salacia (C1)

Sauce (C1)

ScottMcG (C1)

Sebata (C1)

Shaqnato (C1)

Shelob (C1)

ShiaLabeouf (C1)

Shifa (C1)

Shnickers (C1)

Shrimp (C1)

SmallFry (C1)

Specks (C1)

Sprinklers (C1)

Spud (C1)

StephanieG (C1)

Stubby (C1)

Teardrop (C1)

TinyTim (C1)

Tonenili (C1)

Tortoise16 (C1)

Trinitium (C1)

Tyke (C1)

ValleyTerrace (C1)

Wally (C1)

Willis (C1)

YoungMoneyMata (C1)

Yucca (C1)

Zalkecks (C1)

Zeenon (C1)

ZygoTaiga (C1)

Myrna (C2)

Phabba (C2)

Annotating InstitutionUniversity of Pittsburgh
Annotation StatusIn GenBank
MorphotypeMyoviridae
Has been Phamerated?Yes
Gene List

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Specks_1

Specks_2

Specks_3
(nucleotidyltransferase)

Specks_4

Specks_5

Specks_6

Specks_7

Specks_8

Specks_9

Specks_10

Specks_11

Specks_12

Specks_13

Specks_14

Specks_15

Specks_16

Specks_17

Specks_18

Specks_19

Specks_20

Specks_21

Specks_22

Specks_23

Specks_24

Specks_25

Specks_26

Specks_27

Specks_28

Specks_29

Specks_30

Specks_31

Specks_32

Specks_33

Specks_34

Specks_35

Specks_36
(helix-turn-helix DNA binding protein)

Specks_37

Specks_38

Specks_39

Specks_40

Specks_41

Specks_42

Specks_43

Specks_44

Specks_45

Specks_46

Specks_47

Specks_48

Specks_49

Specks_50

Specks_51

Specks_52

Specks_53

Specks_54

Specks_55

Specks_56

Specks_57

Specks_58

Specks_59

Specks_60

Specks_61
(helix-turn-helix DNA binding protein)

Specks_62

Specks_63

Specks_64

Specks_65

Specks_66

Specks_67

Specks_68
(helix-turn-helix DNA binding domain protein)

Specks_69
(helix-turn-helix DNA binding domain protein)

Specks_70

Specks_71

Specks_72

Specks_73

Specks_74

Specks_75

Specks_76

Specks_77

Specks_78

Specks_79

Specks_80

Specks_81

Specks_82

Specks_83

Specks_84

Specks_85

Specks_86

Specks_87

Specks_88

Specks_89

Specks_94
(methyltransferase)

Specks_95

Specks_96
(portal protein)

Specks_97

Specks_98

Specks_99
(ThyX-like thymidylate synthase)

Specks_100

Specks_101
(RNA ligase)

Specks_102
(LysM domain protein)

Specks_103

Specks_104

Specks_105
(major capsid protein)

Specks_106
(capsid decoration protein)

Specks_107

Specks_108

Specks_109

Specks_110

Specks_111

Specks_112

Specks_113
(membrane protein)

Specks_114

Specks_115

Specks_116

Specks_117

Specks_118

Specks_119

Specks_120

Specks_121

Specks_122

Specks_123

Specks_124

Specks_125

Specks_126
(N-acetyltransferase)

Specks_127

Specks_128

Specks_129

Specks_130

Specks_131

Specks_132
(tail sheath protein)

Specks_133

Specks_134

Specks_135
(tail assembly chaperone)

Specks_136
(tail assembly chaperone)

Specks_137
(tape measure protein)

Specks_138
(minor tail protein)

Specks_139

Specks_140

Specks_141
(minor tail protein)

Specks_142

Specks_143

Specks_144
(baseplate wedge protein)

Specks_145
(baseplate wedge protein)

Specks_146

Specks_147

Specks_148

Specks_149
(minor tail protein)

Specks_150
(minor tail protein)

Specks_151

Specks_152

Specks_153

Specks_154

Specks_155

Specks_156

Specks_157

Specks_159
(HNH endonuclease)

Specks_162

Specks_163
(peptidyl tRNA hydrolase)

Specks_178
(D-ala-D-ala carboxypeptidase)

Specks_179

Specks_191

Specks_192
(helicase)

Specks_193

Specks_194

Specks_195

Specks_196

Specks_197

Specks_198

Specks_199

Specks_200

Specks_201
(thymidylate kinase)

Specks_202
(aminotransferase)

Specks_203
(RNA binding domain protein)

Specks_204

Specks_205

Specks_206
(DnaC-like helicase loader)

Specks_207
(DnaB-like dsDNA helicase)

Specks_208

Specks_209
(DNA primase)

Specks_210

Specks_211
(DnaJ-like chaperonin)

Specks_212
(ssDNA binding domain protein)

Specks_213
(DNA polymerase III (alpha))

Specks_214
(Rf-1 peptide chain release factor)

Specks_215
(RecA-like DNA recombinase)

Specks_216
(holliday junction resolvase)

Specks_217

Specks_218
(HNH endonuclease)

Specks_219
(RusA-like resolvase)

Specks_220

Specks_221

Specks_222

Specks_223

Specks_224
(glycoside hydrolase)

Specks_225

Specks_226

Specks_229

Specks_230

Specks_231

Specks_232

Specks_233

Specks_234

Specks_235

Specks_236

Specks_237
(Ro-like RNA binding protein)

Specks_238

Specks_239

Specks_240

Specks_241

Specks_242

Specks_243

Specks_244
(galactosaminyltransferase)

Specks_245

Specks_246
(glycosyltransferase)

Specks_247
(galactosyltransferase)

Specks_248
(nicotinate ribosyltransferase)

Specks_249
(glycosyltransferase)

Specks_250

Specks_251

Specks_252

Specks_253

Specks_254
(HNH endonuclease)

Specks_255
(lysin A)

Specks_256
(membrane protein)

Specks_257
(lysin B)

Specks_258
(terminase)

Specks_259

Specks_260

Specks_261

Specks_262

Specks_263
(polynucleotide kinase)

Specks_264

Specks_265

Specks_266
(serine/threonine kinase)

Specks_267

Specks_268

Specks_269
(adenylosuccinate synthetase)

Specks_270

Specks_271

Specks_272

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMK359318
Refseq NumberNone yet
Archiving Info
Archiving status Archived
SEA Designator 2014XAVUspeckstmj
SEA Lysate Titer 9x10^14pfu/ml
Date of SEA Lysate Titering Nov 4, 2014
Pitt Freezer Box# 11
Pitt Freezer Box Grid# H7
Available Files
Final DNAMaster FileDownload
GenBank File for PhameratorDownload