Mycobacterium phage LolaVinca
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Detailed Information for Phage LolaVinca
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByDenisse L. Hasan
Year Found2018
Location FoundVero Beach, FL USA
Finding InstitutionIndian River State College
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation Temperature37°C
GPS Coordinates27.601687 N, 80.420559 W Map
Discovery NotesDate/Time collected: Sep 2018 at 13:04
Temperature: 30° C (86° F)
Location: Soil obtained from outdoor residential flower garden containing Vinca flowers
Soil: dry, brown, contained spores from Leucocoprinus birnbaumii growing near base of plants
Naming NotesSoil sample was collected from my grandmother's (Lola) flower garden, containing multi-color Catharanthus roseus (vinca).
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedDec 3, 2018
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage367
Genome length (bp)156412
Character of genome endsCircularly Permuted
GC Content64.6%
Fasta file available?Yes: Download fasta file
Characterization
ClusterC
SubclusterC1
Cluster Life CycleLytic
Other Cluster Members

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Ading (C1)

Adlitam (C1)

Alice (C1)

Amataga (C1)

ArcherS7 (C1)

Astraea (C1)

Atlantean (C1)

Audrick (C1)

Ava3 (C1)

BackyardAgain (C1)

BadAgartude (C1)

Bangla1971 (C1)

Basquiat (C1)

BeanWater (C1)

Bigswole (C1)

Bipolarisk (C1)

Blackbrain (C1)

Bonray (C1)

Bread (C1)

Breeniome (C1)

Burrough (C1)

Bxz1 (C1)

Cactojaque (C1)

Cali (C1)

Cane17 (C1)

Catera (C1)

Chargie21 (C1)

CharlieB (C1)

ChaylaJr (C1)

ChickenPhender (C1)

Colt (C1)

Daffodil (C1)

Dandelion (C1)

Darko (C1)

Delilah (C1)

Derek (C1)

Dietrick (C1)

Drazdys (C1)

DrPhinkDaddy (C1)

DTDevon (C1)

EmmaElysia (C1)

EmToTheThree (C1)

Erdmann (C1)

ErnieJ (C1)

Essence (C1)

ET08 (C1)

Ewok (C1)

Flabslab (C1)

Fludd (C1)

FoxtrotP1 (C1)

FrayBell (C1)

FudgeTart (C1)

Gabriel (C1)

Ghost (C1)

Gizmo (C1)

Grungle (C1)

Guwapp (C1)

HyRo (C1)

InigoMontoya (C1)

InterFolia (C1)

Iota (C1)

Janiyra (C1)

Jessibeth14 (C1)

JPickles (C1)

JustHall (C1)

Kamryn (C1)

Kboogie (C1)

Khaleesi (C1)

Koguma (C1)

LifeSavor (C1)

LinStu (C1)

Littleton (C1)

Loanshark (C1)

LolaVinca (C1)

LRRHood (C1)

Lukilu (C1)

Mangeria (C1)

McWolfish (C1)

Megamind (C1)

Melpomini (C1)

MikeLiesIn (C1)

Momo (C1)

MoMoMixon (C1)

Morizzled23 (C1)

Naija (C1)

Napoleon13 (C1)

Nappy (C1)

Nidhogg (C1)

NoodleTree (C1)

Norm (C1)

NuevoMundo (C1)

ParkTD (C1)

Patter (C1)

Phlegm (C1)

Phox (C1)

Phusco (C1)

Pier (C1)

Pinkcreek (C1)

Pio (C1)

Pivoine (C1)

Pleione (C1)

QBert (C1)

Quasimodo (C1)

Rabinovish (C1)

Rahel (C1)

Rizal (C1)

RoMag (C1)

Roots515 (C1)

Salacia (C1)

Sauce (C1)

ScottMcG (C1)

Sebata (C1)

Shaqnato (C1)

Shelob (C1)

ShiaLabeouf (C1)

Shifa (C1)

Shnickers (C1)

Shrimp (C1)

SmallFry (C1)

Specks (C1)

Sprinklers (C1)

Spud (C1)

StephanieG (C1)

Stubby (C1)

Teardrop (C1)

TinyTim (C1)

Tonenili (C1)

Tortoise16 (C1)

Trinitium (C1)

Tyke (C1)

ValleyTerrace (C1)

Wally (C1)

Willis (C1)

YoungMoneyMata (C1)

Yucca (C1)

Zalkecks (C1)

Zeenon (C1)

ZygoTaiga (C1)

Myrna (C2)

Phabba (C2)

Annotating InstitutionIndian River State College
Annotation StatusIn GenBank
Plaque NotesPlaques are circular, clear zones in various sizes, most are approximately 1 mm in diameter.
MorphotypeMyoviridae
Has been Phamerated?Yes
Gene List

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LolaVinca_1

LolaVinca_2

LolaVinca_3
(nucleotidyl transferase)

LolaVinca_4

LolaVinca_5

LolaVinca_6

LolaVinca_7

LolaVinca_8

LolaVinca_9

LolaVinca_10

LolaVinca_11

LolaVinca_12

LolaVinca_13

LolaVinca_14

LolaVinca_15

LolaVinca_16

LolaVinca_17

LolaVinca_18

LolaVinca_19

LolaVinca_20

LolaVinca_21

LolaVinca_22

LolaVinca_23

LolaVinca_24

LolaVinca_25

LolaVinca_26

LolaVinca_27

LolaVinca_28
(HNH endonuclease)

LolaVinca_29

LolaVinca_30

LolaVinca_31

LolaVinca_32
(band-7-like membrane protein)

LolaVinca_33

LolaVinca_34
(helix-turn-helix DNA binding domain protein)

LolaVinca_35

LolaVinca_36

LolaVinca_37

LolaVinca_38
(ribbon-helix-helix DNA binding domain protein)

LolaVinca_39

LolaVinca_40

LolaVinca_41

LolaVinca_42

LolaVinca_43

LolaVinca_44

LolaVinca_45

LolaVinca_46

LolaVinca_47

LolaVinca_48

LolaVinca_49

LolaVinca_50

LolaVinca_51

LolaVinca_52

LolaVinca_53

LolaVinca_54

LolaVinca_55

LolaVinca_56

LolaVinca_57

LolaVinca_58

LolaVinca_59
(helix-turn-helix DNA binding domain protein)

LolaVinca_60

LolaVinca_61

LolaVinca_62

LolaVinca_63

LolaVinca_64

LolaVinca_65

LolaVinca_66
(helix-turn-helix DNA binding domain protein)

LolaVinca_67
(helix-turn-helix DNA binding domain protein)

LolaVinca_68

LolaVinca_69

LolaVinca_70

LolaVinca_71

LolaVinca_72

LolaVinca_73

LolaVinca_74

LolaVinca_75

LolaVinca_76

LolaVinca_77

LolaVinca_78

LolaVinca_79

LolaVinca_80

LolaVinca_81

LolaVinca_82

LolaVinca_83

LolaVinca_84

LolaVinca_85
(ParB-like nuclease domain protein)

LolaVinca_90

LolaVinca_91

LolaVinca_92
(portal protein)

LolaVinca_93

LolaVinca_94

LolaVinca_95
(ThyX-like thymidylate synthase)

LolaVinca_96

LolaVinca_97
(RNA ligase)

LolaVinca_98
(LysM-like endolysin)

LolaVinca_99

LolaVinca_100

LolaVinca_101
(major capsid protein)

LolaVinca_102

LolaVinca_103

LolaVinca_104

LolaVinca_105

LolaVinca_106

LolaVinca_107

LolaVinca_108

LolaVinca_109

LolaVinca_110

LolaVinca_111

LolaVinca_112

LolaVinca_113

LolaVinca_114

LolaVinca_115

LolaVinca_116

LolaVinca_117

LolaVinca_118

LolaVinca_119

LolaVinca_120

LolaVinca_121

LolaVinca_122

LolaVinca_123

LolaVinca_124

LolaVinca_125

LolaVinca_126

LolaVinca_127
(tail sheath protein)

LolaVinca_128

LolaVinca_129

LolaVinca_130
(tail assembly chaperone)

LolaVinca_131
(tail assembly chaperone)

LolaVinca_132
(tape measure protein)

LolaVinca_133

LolaVinca_134

LolaVinca_135

LolaVinca_136
(minor tail protein)

LolaVinca_137

LolaVinca_138

LolaVinca_139
(baseplate wedge protein)

LolaVinca_140
(baseplate J protein)

LolaVinca_141
(HNH endonuclease)

LolaVinca_142

LolaVinca_143

LolaVinca_144

LolaVinca_145

LolaVinca_146
(minor tail protein)

LolaVinca_147

LolaVinca_148

LolaVinca_149

LolaVinca_150

LolaVinca_151

LolaVinca_152

LolaVinca_153

LolaVinca_155

LolaVinca_156
(peptidyl tRNA hydrolase)

LolaVinca_162
(helix-turn-helix DNA binding domain protein)

LolaVinca_164

LolaVinca_172
(HNH endonuclease)

LolaVinca_174
(minor tail protein)

LolaVinca_175

LolaVinca_185

LolaVinca_186
(DNA helicase)

LolaVinca_187

LolaVinca_188

LolaVinca_189

LolaVinca_190

LolaVinca_191

LolaVinca_192

LolaVinca_193

LolaVinca_194

LolaVinca_195
(thymidylate kinase)

LolaVinca_196
(aminotransferase)

LolaVinca_197

LolaVinca_198

LolaVinca_199

LolaVinca_200
(DnaC-like helicase loader)

LolaVinca_201
(DnaB-like dsDNA helicase)

LolaVinca_202

LolaVinca_203
(DNA primase)

LolaVinca_204

LolaVinca_205
(DnaJ-like chaperonin)

LolaVinca_206

LolaVinca_207
(DnaE-like DNA polymerase III)

LolaVinca_208
(RF-1 peptide chain release factor)

LolaVinca_209
(RecA-like DNA recombinase)

LolaVinca_210
(holliday junction resolvase)

LolaVinca_211

LolaVinca_212
(Cas4 family exonuclease)

LolaVinca_213
(RusA-like resolvase)

LolaVinca_214

LolaVinca_215

LolaVinca_216

LolaVinca_217

LolaVinca_218
(glycoside hydrolase)

LolaVinca_219

LolaVinca_220

LolaVinca_223

LolaVinca_224

LolaVinca_225

LolaVinca_226

LolaVinca_227

LolaVinca_228

LolaVinca_229
(Ro-like RNA binding protein)

LolaVinca_230

LolaVinca_231

LolaVinca_232

LolaVinca_233

LolaVinca_234

LolaVinca_235

LolaVinca_236
(glycosyltransferase)

LolaVinca_237

LolaVinca_238
(glycosyltransferase)

LolaVinca_239
(glycosyltransferase)

LolaVinca_240
(nicotinate ribosyltransferase)

LolaVinca_241
(glycosyltransferase)

LolaVinca_242

LolaVinca_243

LolaVinca_244

LolaVinca_245

LolaVinca_246
(lysin A)

LolaVinca_247
(holin)

LolaVinca_248
(lysin B)

LolaVinca_249
(terminase)

LolaVinca_250

LolaVinca_251

LolaVinca_252

LolaVinca_253

LolaVinca_254
(polynucleotide kinase)

LolaVinca_255

LolaVinca_256

LolaVinca_257
(serine/threonine kinase)

LolaVinca_258
(HNH endonuclease)

LolaVinca_259

LolaVinca_260
(PurA-like adenylosuccinate synthetase)

LolaVinca_261

LolaVinca_262

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMN183280
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 77
Pitt Freezer Box Grid# H12
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload