Mycobacterium phage Jedediah
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Detailed Information for Phage Jedediah
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByGrace Chen
Year Found2021
Location FoundPhiladelphia, PA United States of America
Finding InstitutionUniversity of the Sciences in Philadelphia
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation Temperature37°C
GPS Coordinates39.909698 N, 75.311475 W Map
Discovery NotesThe soil was taken from an area that was close to a road and a park, and was taken the day after there was a rainstorm.
Naming NotesNamed after Owen Wilson’s character in Night at the Museum, who is also particularly small and annoying.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedFeb 3, 2022
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage156129
Genome length (bp)156129
Character of genome endsCircularly Permuted
GC Content64.7%
Fasta file available?Yes: Download fasta file
Characterization
ClusterC
SubclusterC1
Cluster Life CycleLytic
Other Cluster Members

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Ading (C1)

Adlitam (C1)

Alice (C1)

Amataga (C1)

ArcherS7 (C1)

Astraea (C1)

Atlantean (C1)

Audrick (C1)

Ava3 (C1)

Babyland (C1)

BackyardAgain (C1)

BadAgartude (C1)

BananaFence (C1)

Bangla1971 (C1)

Basquiat (C1)

BeanWater (C1)

Bigswole (C1)

Bipolarisk (C1)

Blackbrain (C1)

Bonray (C1)

Bread (C1)

Breeniome (C1)

Burrough (C1)

Bxz1 (C1)

Cactojaque (C1)

Cali (C1)

Cane17 (C1)

Capablanca (C1)

Catera (C1)

Chargie21 (C1)

CharlieB (C1)

ChaylaJr (C1)

ChickenPhender (C1)

Chomp (C1)

CindyLou (C1)

Colt (C1)

Daffodil (C1)

Dandelion (C1)

Darko (C1)

Delilah (C1)

Delylah (C1)

Derek (C1)

Dietrick (C1)

DirtMonster (C1)

Drazdys (C1)

DrPhinkDaddy (C1)

DTDevon (C1)

EasyJones (C1)

EmmaElysia (C1)

EmToTheThree (C1)

Erdmann (C1)

ErnieJ (C1)

Essence (C1)

ET08 (C1)

Ewok (C1)

Flabslab (C1)

Fludd (C1)

FoxtrotP1 (C1)

FrayBell (C1)

FudgeTart (C1)

Gabriel (C1)

Ghost (C1)

Gizmo (C1)

Grungle (C1)

Guwapp (C1)

HyRo (C1)

I3 (C1)

IkeLoa (C1)

InigoMontoya (C1)

InterFolia (C1)

Iota (C1)

Izajani (C1)

Janiyra (C1)

Jaygup (C1)

Jedediah (C1)

Jemmno (C1)

Jessibeth14 (C1)

JPickles (C1)

JustHall (C1)

Kamryn (C1)

Kboogie (C1)

Khaleesi (C1)

Koguma (C1)

Latch (C1)

LifeSavor (C1)

LinStu (C1)

Littleton (C1)

Loanshark (C1)

LolaVinca (C1)

LRRHood (C1)

Lukilu (C1)

Maby2021 (C1)

Mangeria (C1)

McGee (C1)

McWolfish (C1)

Megamind (C1)

Melpomini (C1)

MikeLiesIn (C1)

Mikro (C1)

Momo (C1)

MoMoMixon (C1)

Morizzled23 (C1)

Naija (C1)

Napoleon13 (C1)

Nappy (C1)

Nidhogg (C1)

NoodleTree (C1)

Norm (C1)

NuevoMundo (C1)

ParkTD (C1)

Patter (C1)

Phlegm (C1)

Phox (C1)

Phusco (C1)

Pier (C1)

Pinkcreek (C1)

Pio (C1)

Pivoine (C1)

Pleione (C1)

QBert (C1)

Quasimodo (C1)

Rabinovish (C1)

Rahel (C1)

Rizal (C1)

RoMag (C1)

Ronan (C1)

Roots515 (C1)

Salacia (C1)

Sauce (C1)

ScottMcG (C1)

Sebata (C1)

Shaqnato (C1)

Shelob (C1)

ShiaLabeouf (C1)

Shifa (C1)

Shnickers (C1)

Shrimp (C1)

SilverDipper (C1)

SmallFry (C1)

Specks (C1)

Sprinklers (C1)

Spud (C1)

StephanieG (C1)

Stubby (C1)

Teardrop (C1)

TinyTim (C1)

Tonenili (C1)

Tortoise16 (C1)

Trinitium (C1)

Turret (C1)

Tyke (C1)

ValleyTerrace (C1)

Wally (C1)

Willis (C1)

YemiJoy2021 (C1)

YoungMoneyMata (C1)

Yucca (C1)

Zalkecks (C1)

Zeenon (C1)

ZygoTaiga (C1)

Myrna (C2)

Phabba (C2)

ScoobyDoobyDoo (C2)

Annotating InstitutionUniversity of the Sciences in Philadelphia
Annotation StatusIn GenBank
Plaque NotesClear, around 0.5mm-1mm
MorphotypeMyoviridae
Has been Phamerated?Yes
Gene List

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Jedediah_1

Jedediah_2

Jedediah_3
(nucleotidyl transferase)

Jedediah_4

Jedediah_5

Jedediah_6

Jedediah_7

Jedediah_8

Jedediah_9

Jedediah_10

Jedediah_11

Jedediah_12

Jedediah_13

Jedediah_14

Jedediah_15

Jedediah_16

Jedediah_17

Jedediah_18
(histidine triad nucleotide binding protein)

Jedediah_19

Jedediah_20

Jedediah_21

Jedediah_22

Jedediah_23

Jedediah_24

Jedediah_25

Jedediah_26

Jedediah_27

Jedediah_28

Jedediah_29
(membrane protein, Band-7-like)

Jedediah_30

Jedediah_31

Jedediah_32

Jedediah_33

Jedediah_34

Jedediah_35
(ribbon-helix-helix DNA binding domain)

Jedediah_36

Jedediah_37

Jedediah_38

Jedediah_39

Jedediah_40

Jedediah_41

Jedediah_42

Jedediah_43

Jedediah_44

Jedediah_45

Jedediah_46

Jedediah_47

Jedediah_48

Jedediah_49

Jedediah_50

Jedediah_51

Jedediah_52

Jedediah_53

Jedediah_54

Jedediah_55

Jedediah_56
(helix-turn-helix DNA binding domain)

Jedediah_57

Jedediah_58

Jedediah_59

Jedediah_60

Jedediah_61

Jedediah_62

Jedediah_63
(helix-turn-helix DNA binding domain)

Jedediah_64
(helix-turn-helix DNA binding domain)

Jedediah_65

Jedediah_66

Jedediah_67

Jedediah_68

Jedediah_69

Jedediah_70

Jedediah_71

Jedediah_72

Jedediah_73

Jedediah_74

Jedediah_75

Jedediah_76

Jedediah_77

Jedediah_78

Jedediah_79

Jedediah_80

Jedediah_81

Jedediah_82

Jedediah_83

Jedediah_84

Jedediah_85

Jedediah_86

Jedediah_91

Jedediah_92

Jedediah_93
(portal protein)

Jedediah_94

Jedediah_95

Jedediah_96
(ThyX-like thymidylate synthase)

Jedediah_97

Jedediah_98
(RNA ligase)

Jedediah_99
(HNH endonuclease)

Jedediah_100

Jedediah_101

Jedediah_102

Jedediah_103
(major capsid protein)

Jedediah_104

Jedediah_105
(head fiber protein)

Jedediah_106

Jedediah_107

Jedediah_108

Jedediah_109

Jedediah_110

Jedediah_111

Jedediah_112

Jedediah_113

Jedediah_114

Jedediah_115

Jedediah_116

Jedediah_117

Jedediah_118

Jedediah_119

Jedediah_120

Jedediah_121

Jedediah_122

Jedediah_123

Jedediah_124
(acetyltransferase)

Jedediah_125

Jedediah_126

Jedediah_127

Jedediah_128

Jedediah_129

Jedediah_130
(tail sheath protein)

Jedediah_131

Jedediah_132

Jedediah_133
(tail assembly chaperone)

Jedediah_134
(tail assembly chaperone)

Jedediah_135
(tape measure protein)

Jedediah_136

Jedediah_137

Jedediah_138

Jedediah_139
(minor tail protein)

Jedediah_140

Jedediah_141

Jedediah_142
(baseplate wedge protein)

Jedediah_143
(baseplate wedge protein)

Jedediah_144

Jedediah_145

Jedediah_146

Jedediah_147
(minor tail protein)

Jedediah_148
(minor tail protein)

Jedediah_149

Jedediah_150

Jedediah_151

Jedediah_152

Jedediah_153

Jedediah_154

Jedediah_155

Jedediah_159

Jedediah_160
(peptidyl tRNA hydrolase)

Jedediah_166

Jedediah_176
(minor tail protein, D-ala-D-ala carboxypeptidase)

Jedediah_177

Jedediah_187

Jedediah_188
(DNA helicase)

Jedediah_189

Jedediah_190

Jedediah_191

Jedediah_192

Jedediah_193

Jedediah_194

Jedediah_195

Jedediah_196

Jedediah_197
(thymidylate kinase)

Jedediah_198
(aminotransferase)

Jedediah_199

Jedediah_200

Jedediah_201

Jedediah_202
(DnaC-like helicase loader)

Jedediah_203
(DnaB-like dsDNA helicase)

Jedediah_204

Jedediah_205
(DNA primase)

Jedediah_206

Jedediah_207
(chaperonin, DnaJ-like)

Jedediah_208
(ssDNA binding protein)

Jedediah_209
(DnaE-like DNA polymerase III (alpha))

Jedediah_210
(RF-1 peptide chain release factor)

Jedediah_211
(RecA-like DNA recombinase)

Jedediah_212
(Holliday junction resolvase)

Jedediah_213

Jedediah_214
(HNH endonuclease)

Jedediah_215
(RusA-like resolvase (endonuclease))

Jedediah_216

Jedediah_217

Jedediah_218

Jedediah_219

Jedediah_220

Jedediah_221

Jedediah_222
(HNH endonuclease)

Jedediah_223

Jedediah_226

Jedediah_227

Jedediah_228

Jedediah_229

Jedediah_230

Jedediah_231

Jedediah_232

Jedediah_233

Jedediah_234
(Ro-like RNA binding protein)

Jedediah_235

Jedediah_236

Jedediah_237

Jedediah_238

Jedediah_239

Jedediah_240

Jedediah_241

Jedediah_242
(glycosyltransferase)

Jedediah_243

Jedediah_244
(glycosyltransferase)

Jedediah_245
(glycosyltransferase)

Jedediah_246
(PnuC-like nicotinamide riboside transporter)

Jedediah_247
(glycosyltransferase)

Jedediah_248

Jedediah_249

Jedediah_250

Jedediah_251

Jedediah_252
(lysin A)

Jedediah_253
(holin)

Jedediah_254
(lysin B)

Jedediah_255
(terminase)

Jedediah_256

Jedediah_257

Jedediah_258

Jedediah_259

Jedediah_260
(polynucleotide kinase)

Jedediah_261

Jedediah_262
(serine/threonine kinase)

Jedediah_263

Jedediah_264

Jedediah_265
(adenylosuccinate synthetase, PurA-like)

Jedediah_266

Jedediah_267

Jedediah_268

Jedediah_269

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionON755189
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 136
Pitt Freezer Box Grid# A11
Available Files
Plaque PictureDownload
GenBank File for PhameratorDownload