Mycobacterium phage ChickenPhender
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Detailed Information for Phage ChickenPhender
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Former namesChickenPhender
Found ByGarlyn Colas
Year Found2014
Location FoundBaltimore, MD United States of America
Finding InstitutionJohns Hopkins University
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS Coordinates39.333859 N, 76.623489 W Map
Discovery NotesThe phage was collected on August 27th, 2014 at 2:37 pm. The environment had moist soil with some foliage around the area. There was not much sunlight and it was near a small stream with polluted water. Not much human activity, occasional human contact since tree is a foot path nearby. The temperature was 22°C and mostly sunny.
Naming NotesOnce the EM photos came out for this phage, the first thought that came to me was, "Wow my phages look really small and cute!" Then, once the camera zoomed in on the phages a bit more, the second thought that came to mind was that the phages looked like chicken legs. From then on the phage was forever connected to the image of a chicken leg in my head, so I thought it was fitting to name with the word chicken in it. Therefore, the name chicken phender was formed and given to my phage.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 18, 2015
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage967
Genome length (bp)154397
Character of genome endsCircularly Permuted
GC Content64.7%
Fasta file available?Yes: Download fasta file
Characterization
ClusterC
SubclusterC1
Cluster Life CycleLytic
Other Cluster Members

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Boonesok (None)

CLach (None)

DavidMina (None)

DitchDweller (None)

Elpis (None)

Genet (None)

Hard2get (None)

Hippocrates (None)

Kali (None)

Linnaeus (None)

LittleSpot (None)

Lsquared (None)

Marlex (None)

Minipoke (None)

MoBama (None)

PeeWee (None)

Pesky7 (None)

Phomnie (None)

Phyllis (None)

Roku (None)

Sagamore (None)

Samarai (None)

ShenziUR (None)

SuperCallie (None)

TinyC (None)

Trilla23 (None)

Turret (None)

RetimsGems (A1)

Squidney (A3)

Ading (C1)

Adlitam (C1)

Alice (C1)

Amataga (C1)

ArcherS7 (C1)

Astraea (C1)

Atlantean (C1)

Atlas (C1)

Audrick (C1)

Ava3 (C1)

BadAgartude (C1)

Bangla1971 (C1)

Basquiat (C1)

BeanWater (C1)

Bigswole (C1)

Bipolarisk (C1)

Blackbrain (C1)

Bonray (C1)

Bread (C1)

Breeniome (C1)

Burrough (C1)

Bxz1 (C1)

Cactojaque (C1)

Cali (C1)

Cane17 (C1)

Catera (C1)

Chargie21 (C1)

CharlieB (C1)

ChickenPhender (C1)

Colt (C1)

Daffodil (C1)

Dandelion (C1)

Darko (C1)

Delilah (C1)

Derek (C1)

Dietrick (C1)

Donegal (C1)

Doodle1 (C1)

Drazdys (C1)

DrPhinkDaddy (C1)

DTDevon (C1)

EmmaElysia (C1)

EmToTheThree (C1)

Erdmann (C1)

ErnieJ (C1)

Essence (C1)

ET08 (C1)

Ewok (C1)

Exxus285 (C1)

Flabslab (C1)

Fludd (C1)

FoxtrotP1 (C1)

FrayBell (C1)

FudgeTart (C1)

Gabriel (C1)

Ghost (C1)

Gizmo (C1)

Grungle (C1)

Guwapp (C1)

HarrySpotter (C1)

HyRo (C1)

InigoMontoya (C1)

InterFolia (C1)

Iota (C1)

Isee1101 (C1)

JennanaJr (C1)

Jessibeth14 (C1)

JPickles (C1)

JustHall (C1)

Kamryn (C1)

Kboogie (C1)

Khaleesi (C1)

Koguma (C1)

LifeSavor (C1)

LinStu (C1)

Lionheart (C1)

Littleton (C1)

Loanshark (C1)

LolaVinca (C1)

LRRHood (C1)

Lukilu (C1)

McWolfish (C1)

Megamind (C1)

Melpomini (C1)

MePac (C1)

MikeLiesIn (C1)

Momo (C1)

MoMoMixon (C1)

Morizzled23 (C1)

MrsHay (C1)

Naija (C1)

Napoleon13 (C1)

Nappy (C1)

Nidhogg (C1)

NoodleTree (C1)

Norm (C1)

NuevoMundo (C1)

OaklaforG (C1)

ParkTD (C1)

Patch (C1)

Patter (C1)

Phlegm (C1)

Phox (C1)

Phusco (C1)

Pier (C1)

Pio (C1)

Pivoine (C1)

Pleione (C1)

QBert (C1)

Rabinovish (C1)

Rahel (C1)

Rizal (C1)

RoMag (C1)

Roots515 (C1)

Salacia (C1)

SandySandal (C1)

Sauce (C1)

ScottMcG (C1)

Sebastian (C1)

Sebata (C1)

ShankPowerGod (C1)

Shaqnato (C1)

Shelob (C1)

ShiaLabeouf (C1)

Shnickers (C1)

Shrimp (C1)

SmallFry (C1)

Specks (C1)

Sprinklers (C1)

Spud (C1)

Stubby (C1)

Teardrop (C1)

TheO (C1)

Thuathua (C1)

TinyTim (C1)

Tonenili (C1)

Tortoise16 (C1)

Trinitium (C1)

Tyke (C1)

ValleyTerrace (C1)

Wally (C1)

Willis (C1)

YoungMoneyMata (C1)

Yucca (C1)

Zalkecks (C1)

Zeenon (C1)

ZygoTaiga (C1)

Feauphix (C2)

Matcha (C2)

Myrna (C2)

Phabba (C2)

SimSimmers (C2)

SrishMeg2525 (C2)

Annotation StatusIn GenBank
Plaque NotesThe plaques are very small in size, when matured they have a diameter of about 0.4 mm or less. The center of the plaques are very clear, the phages are most likely lysogenic phages, with no cloudiness.
MorphotypeMyoviridae
Has been Phamerated?Yes
Gene List

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ChickenPhender_1

ChickenPhender_2

ChickenPhender_3
(HNH endonuclease)

ChickenPhender_4

ChickenPhender_5

ChickenPhender_6

ChickenPhender_7

ChickenPhender_8

ChickenPhender_9

ChickenPhender_10

ChickenPhender_11

ChickenPhender_12

ChickenPhender_13

ChickenPhender_14

ChickenPhender_15

ChickenPhender_16

ChickenPhender_17
(histidine triad nucleotide binding protein)

ChickenPhender_18

ChickenPhender_19

ChickenPhender_20

ChickenPhender_21

ChickenPhender_22

ChickenPhender_23

ChickenPhender_24

ChickenPhender_25

ChickenPhender_26

ChickenPhender_27

ChickenPhender_28

ChickenPhender_29

ChickenPhender_30
(helix-turn-helix DNA binding protein)

ChickenPhender_31

ChickenPhender_32

ChickenPhender_33

ChickenPhender_34

ChickenPhender_35

ChickenPhender_36

ChickenPhender_37

ChickenPhender_38

ChickenPhender_39

ChickenPhender_40

ChickenPhender_41

ChickenPhender_42

ChickenPhender_43

ChickenPhender_44

ChickenPhender_45

ChickenPhender_46

ChickenPhender_47

ChickenPhender_48

ChickenPhender_49

ChickenPhender_50

ChickenPhender_51
(helix-turn-helix DNA binding protein)

ChickenPhender_52

ChickenPhender_53

ChickenPhender_54

ChickenPhender_55

ChickenPhender_56

ChickenPhender_57

ChickenPhender_58
(helix-turn-helix DNA binding domain protein)

ChickenPhender_59
(helix-turn-helix DNA binding domain protein)

ChickenPhender_60

ChickenPhender_61

ChickenPhender_62

ChickenPhender_63

ChickenPhender_64

ChickenPhender_65

ChickenPhender_66

ChickenPhender_67

ChickenPhender_68

ChickenPhender_69

ChickenPhender_70

ChickenPhender_71

ChickenPhender_72

ChickenPhender_73

ChickenPhender_74

ChickenPhender_75

ChickenPhender_76

ChickenPhender_77

ChickenPhender_78

ChickenPhender_79

ChickenPhender_84
(methyltransferase)

ChickenPhender_85

ChickenPhender_86
(portal protein)

ChickenPhender_87

ChickenPhender_88

ChickenPhender_89
(ThyX-like thymidylate synthase)

ChickenPhender_90

ChickenPhender_91
(RNA ligase)

ChickenPhender_92
(LysM domain protein)

ChickenPhender_93

ChickenPhender_94

ChickenPhender_95
(major capsid protein)

ChickenPhender_96
(holliday junction resolvase)

ChickenPhender_97
(capsid decoration protein)

ChickenPhender_98

ChickenPhender_99

ChickenPhender_100

ChickenPhender_101

ChickenPhender_102

ChickenPhender_103

ChickenPhender_104
(membrane protein)

ChickenPhender_105

ChickenPhender_106

ChickenPhender_107

ChickenPhender_108

ChickenPhender_109

ChickenPhender_110

ChickenPhender_111

ChickenPhender_112

ChickenPhender_113

ChickenPhender_114

ChickenPhender_115

ChickenPhender_116

ChickenPhender_117
(N-acetyltransferase)

ChickenPhender_118

ChickenPhender_119

ChickenPhender_120

ChickenPhender_121

ChickenPhender_122

ChickenPhender_123
(tail sheath protein)

ChickenPhender_124

ChickenPhender_125

ChickenPhender_126
(tail assembly chaperone)

ChickenPhender_127
(tail assembly chaperone)

ChickenPhender_128
(tape measure protein)

ChickenPhender_129
(minor tail protein)

ChickenPhender_130

ChickenPhender_131

ChickenPhender_132
(minor tail protein)

ChickenPhender_133

ChickenPhender_134

ChickenPhender_135
(baseplate wedge protein)

ChickenPhender_136
(baseplate wedge protein)

ChickenPhender_137

ChickenPhender_138

ChickenPhender_139

ChickenPhender_140

ChickenPhender_141
(minor tail protein)

ChickenPhender_142
(minor tail protein)

ChickenPhender_143

ChickenPhender_144

ChickenPhender_145

ChickenPhender_146

ChickenPhender_147

ChickenPhender_148

ChickenPhender_149

ChickenPhender_150

ChickenPhender_153

ChickenPhender_154
(peptidyl tRNA hydrolase)

ChickenPhender_161

ChickenPhender_169
(HNH endonuclease)

ChickenPhender_171
(D-ala-D-ala carboxypeptidase)

ChickenPhender_172

ChickenPhender_184

ChickenPhender_185
(helicase)

ChickenPhender_186

ChickenPhender_187

ChickenPhender_188

ChickenPhender_189

ChickenPhender_190

ChickenPhender_191

ChickenPhender_192

ChickenPhender_193

ChickenPhender_194
(thymidylate kinase)

ChickenPhender_195
(aminotransferase)

ChickenPhender_196
(RNA binding domain protein)

ChickenPhender_197

ChickenPhender_198
(DnaC-like helicase loader)

ChickenPhender_199
(DnaB-like dsDNA helicase)

ChickenPhender_200

ChickenPhender_201
(DNA primase)

ChickenPhender_202

ChickenPhender_203
(DnaJ-like chaperonin)

ChickenPhender_204
(ssDNA binding domain protein)

ChickenPhender_205
(DNA polymerase III (alpha))

ChickenPhender_206
(Rf-1 peptide chain release factor)

ChickenPhender_207
(RecA-like DNA recombinase)

ChickenPhender_208
(holliday junction resolvase)

ChickenPhender_209

ChickenPhender_210
(HNH endonuclease)

ChickenPhender_211
(RusA-like resolvase)

ChickenPhender_212

ChickenPhender_213

ChickenPhender_214

ChickenPhender_215

ChickenPhender_216
(glycoside hydrolase)

ChickenPhender_217

ChickenPhender_218

ChickenPhender_221

ChickenPhender_222

ChickenPhender_223

ChickenPhender_224

ChickenPhender_225

ChickenPhender_226

ChickenPhender_227

ChickenPhender_228

ChickenPhender_229
(Ro-like RNA binding protein)

ChickenPhender_230

ChickenPhender_231

ChickenPhender_232

ChickenPhender_233

ChickenPhender_234

ChickenPhender_235

ChickenPhender_236
(galactosaminyltransferase)

ChickenPhender_237

ChickenPhender_238
(glycosyltransferase)

ChickenPhender_239
(galactosyltransferase)

ChickenPhender_240
(nicotinate ribosyltransferase)

ChickenPhender_241
(glycosyltransferase)

ChickenPhender_242

ChickenPhender_243

ChickenPhender_244

ChickenPhender_245

ChickenPhender_246
(lysin A)

ChickenPhender_247
(membrane protein)

ChickenPhender_248
(lysin B)

ChickenPhender_249
(terminase)

ChickenPhender_250

ChickenPhender_251

ChickenPhender_252

ChickenPhender_253

ChickenPhender_254
(polynucleotide kinase)

ChickenPhender_255

ChickenPhender_256

ChickenPhender_257
(serine/threonine kinase)

ChickenPhender_258

ChickenPhender_259

ChickenPhender_260
(adenylosuccinate synthetase)

ChickenPhender_261

ChickenPhender_262

ChickenPhender_263

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMK359364
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 13
Pitt Freezer Box Grid# H8
Available Files
Plaque PictureDownload
EM PictureDownload
Final DNAMaster FileDownload
GenBank File for PhameratorDownload