Recently Added Phages

Heath Litany Cherubi Shimmer Reyes19

Recently Modified Phages

Crikey Mbummer ODay Kidikus HughesHero

Recently Finished Phages

Dre3 (CT) Misfit (E) Indigenous (BI1) Bexan (A1) Danforth (A8)
Mycobacterium phage Patter
Know something about this phage that we don't? Modify its data.
Detailed Information for Phage Patter
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByJenna Kwiecinski
Year Found2016
Location FoundPhiladelphia, PA USA
Finding InstitutionUniversity of the Sciences in Philadelphia
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Unknown
Isolation TemperatureNot entered
GPS Coordinates39.94472 N, 75.20778 W Map
Discovery NotesSample was collected on September 15, 2016, from the A level soil horizon. It was collected from a rain purification area at University of the Sciences. Type of soil was sandy loam according to a ribbon test. Weather was 80 degrees Fahrenheit with cloudless skies and no wind.
Naming NotesThe name Patter came from the "pitter-patter" sound that rain makes. My phage was collected from a rain purification area, so I wanted its name to relate to rain/water.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 18, 2017
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage591
Genome length (bp)155470
Character of genome endsCircularly Permuted
GC Content64.7%
Fasta file available?Yes: Download fasta file
Characterization
ClusterC
SubclusterC1
Cluster Life CycleLytic
Other Cluster Members

Click to View

Ading (C1)

Adlitam (C1)

Alice (C1)

Amataga (C1)

ArcherS7 (C1)

Astraea (C1)

Atlantean (C1)

Audrick (C1)

Ava3 (C1)

BadAgartude (C1)

Bangla1971 (C1)

Basquiat (C1)

BeanWater (C1)

Bigswole (C1)

Bipolarisk (C1)

Blackbrain (C1)

Bonray (C1)

Bread (C1)

Breeniome (C1)

Burrough (C1)

Bxz1 (C1)

Cactojaque (C1)

Cali (C1)

Cane17 (C1)

Catera (C1)

Chargie21 (C1)

CharlieB (C1)

ChickenPhender (C1)

Colt (C1)

Daffodil (C1)

Dandelion (C1)

Darko (C1)

Delilah (C1)

Derek (C1)

Dietrick (C1)

Drazdys (C1)

DrPhinkDaddy (C1)

DTDevon (C1)

EmmaElysia (C1)

EmToTheThree (C1)

Erdmann (C1)

ErnieJ (C1)

Essence (C1)

ET08 (C1)

Ewok (C1)

Flabslab (C1)

Fludd (C1)

FoxtrotP1 (C1)

FrayBell (C1)

FudgeTart (C1)

Gabriel (C1)

Ghost (C1)

Gizmo (C1)

Grungle (C1)

Guwapp (C1)

HyRo (C1)

InigoMontoya (C1)

InterFolia (C1)

Iota (C1)

Jessibeth14 (C1)

JPickles (C1)

JustHall (C1)

Kamryn (C1)

Kboogie (C1)

Khaleesi (C1)

Koguma (C1)

LifeSavor (C1)

LinStu (C1)

Littleton (C1)

Loanshark (C1)

LolaVinca (C1)

LRRHood (C1)

Lukilu (C1)

Mangeria (C1)

McWolfish (C1)

Megamind (C1)

Melpomini (C1)

MikeLiesIn (C1)

Momo (C1)

MoMoMixon (C1)

Morizzled23 (C1)

Naija (C1)

Napoleon13 (C1)

Nappy (C1)

Nidhogg (C1)

NoodleTree (C1)

Norm (C1)

NuevoMundo (C1)

ParkTD (C1)

Patter (C1)

Phlegm (C1)

Phox (C1)

Phusco (C1)

Pier (C1)

Pinkcreek (C1)

Pio (C1)

Pivoine (C1)

Pleione (C1)

QBert (C1)

Rabinovish (C1)

Rahel (C1)

Rizal (C1)

RoMag (C1)

Roots515 (C1)

Salacia (C1)

Sauce (C1)

ScottMcG (C1)

Sebata (C1)

Shaqnato (C1)

Shelob (C1)

ShiaLabeouf (C1)

Shifa (C1)

Shnickers (C1)

Shrimp (C1)

SmallFry (C1)

Specks (C1)

Sprinklers (C1)

Spud (C1)

StephanieG (C1)

Stubby (C1)

Teardrop (C1)

TinyTim (C1)

Tonenili (C1)

Tortoise16 (C1)

Trinitium (C1)

Tyke (C1)

ValleyTerrace (C1)

Wally (C1)

Willis (C1)

YoungMoneyMata (C1)

Yucca (C1)

Zalkecks (C1)

Zeenon (C1)

ZygoTaiga (C1)

Myrna (C2)

Phabba (C2)

Annotating InstitutionUniversity of Pittsburgh
Annotation StatusIn GenBank
Plaque NotesPlaques were 1 mm in diameter and lytic.
MorphotypeMyoviridae
Has been Phamerated?Yes
Gene List

Click to View

Patter_1

Patter_2

Patter_3
(nucleotidyltransferase)

Patter_4

Patter_5

Patter_6

Patter_7

Patter_8

Patter_9

Patter_10

Patter_11

Patter_12

Patter_13

Patter_14

Patter_15

Patter_16

Patter_17
(histidine triad nucleotide binding protein)

Patter_18

Patter_19

Patter_20

Patter_21

Patter_22

Patter_23

Patter_24

Patter_25

Patter_26

Patter_27

Patter_28

Patter_29

Patter_30

Patter_31
(helix-turn-helix DNA binding protein)

Patter_32

Patter_33

Patter_34

Patter_35
(ribbon-helix-helix DNA binding domain protein)

Patter_36

Patter_37

Patter_38

Patter_39

Patter_40

Patter_41

Patter_42

Patter_43

Patter_44

Patter_45

Patter_46

Patter_47

Patter_48

Patter_49

Patter_50

Patter_51

Patter_52

Patter_53

Patter_54

Patter_55
(helix-turn-helix DNA binding protein)

Patter_56

Patter_57

Patter_58

Patter_59

Patter_60

Patter_61

Patter_62
(helix-turn-helix DNA binding domain protein)

Patter_63
(helix-turn-helix DNA binding domain protein)

Patter_64

Patter_65

Patter_66

Patter_67

Patter_68

Patter_69

Patter_70

Patter_71

Patter_72

Patter_73

Patter_74

Patter_75

Patter_76

Patter_77

Patter_78

Patter_79

Patter_80

Patter_81

Patter_82

Patter_83

Patter_88
(methyltransferase)

Patter_89

Patter_90
(portal protein)

Patter_91

Patter_92

Patter_93
(ThyX-like thymidylate synthase)

Patter_94

Patter_95
(RNA ligase)

Patter_96
(HNH endonuclease)

Patter_97
(LysM domain protein)

Patter_98

Patter_99

Patter_100
(major capsid protein)

Patter_101
(capsid decoration protein)

Patter_102

Patter_103

Patter_104

Patter_105

Patter_106

Patter_107

Patter_108
(membrane protein)

Patter_109

Patter_110

Patter_111

Patter_112

Patter_113

Patter_114

Patter_115

Patter_116

Patter_117

Patter_118

Patter_119

Patter_120

Patter_121
(N-acetyltransferase)

Patter_122

Patter_123

Patter_124

Patter_125

Patter_126

Patter_127

Patter_128
(tail sheath protein)

Patter_129

Patter_130

Patter_131
(tail assembly chaperone)

Patter_132
(tail assembly chaperone)

Patter_133
(tape measure protein)

Patter_134
(minor tail protein)

Patter_135

Patter_136

Patter_137
(minor tail protein)

Patter_138

Patter_139

Patter_140
(baseplate wedge protein)

Patter_141
(baseplate wedge protein)

Patter_142

Patter_143

Patter_144

Patter_145
(minor tail protein)

Patter_146
(minor tail protein)

Patter_147

Patter_148

Patter_149

Patter_150

Patter_151

Patter_152

Patter_153

Patter_157

Patter_158
(peptidyl tRNA hydrolase)

Patter_172
(HNH endonuclease)

Patter_174
(D-ala-D-ala carboxypeptidase)

Patter_175

Patter_187

Patter_188
(helicase)

Patter_189

Patter_190

Patter_191

Patter_192

Patter_193

Patter_194

Patter_195

Patter_196

Patter_197

Patter_198
(thymidylate kinase)

Patter_199
(aminotransferase)

Patter_200
(RNA binding domain protein)

Patter_201

Patter_202

Patter_203
(DnaC-like helicase loader)

Patter_204
(DnaB-like dsDNA helicase)

Patter_205

Patter_206
(DNA primase)

Patter_207

Patter_208
(DnaJ-like chaperonin)

Patter_209
(ssDNA binding domain protein)

Patter_210
(DNA polymerase III (alpha))

Patter_211
(Rf-1 peptide chain release factor)

Patter_212
(RecA-like DNA recombinase)

Patter_213
(holliday junction resolvase)

Patter_214

Patter_215
(HNH endonuclease)

Patter_216
(RusA-like resolvase)

Patter_217

Patter_218

Patter_219

Patter_220

Patter_221
(glycoside hydrolase)

Patter_222

Patter_223
(HNH endonuclease)

Patter_224

Patter_227

Patter_228

Patter_229

Patter_230

Patter_231

Patter_232

Patter_233

Patter_234

Patter_235
(Ro-like RNA binding protein)

Patter_236

Patter_237

Patter_238

Patter_239

Patter_240

Patter_241

Patter_242
(galactosyltransferase)

Patter_243
(nicotinate ribosyltransferase)

Patter_244
(glycosyltransferase)

Patter_245
(galactosyltransferase)

Patter_246
(nicotinate ribosyltransferase)

Patter_247
(glycosyltransferase)

Patter_248

Patter_249

Patter_250

Patter_251

Patter_252
(lysin A)

Patter_253
(membrane protein)

Patter_254
(lysin B)

Patter_255
(terminase)

Patter_256

Patter_257

Patter_258

Patter_259

Patter_260
(polynucleotide kinase)

Patter_261

Patter_262

Patter_263
(serine/threonine kinase)

Patter_264

Patter_265

Patter_266
(adenylosuccinate synthetase)

Patter_267

Patter_268

Patter_269

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMK359335
Refseq NumberNone yet
Archiving Info
Archiving status Archived
SEA Lysate Titer 1.11 x 10^9 pfu
Date of SEA Lysate Titering Oct 11, 2016
Pitt Freezer Box# 34
Pitt Freezer Box Grid# F1
Available Files
Final DNAMaster FileDownload
GenBank File for PhameratorDownload