Mycobacterium phage Gizmo
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Detailed Information for Phage Gizmo
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByElyse Borchik
Year Found2011
Location FoundBloomington, IL USA
Finding InstitutionIllinois Wesleyan University
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?No
Isolation TemperatureNot entered
GPS Coordinates40.492444 N, 88.990901 W Map
Discovery NotesDry soil mixed with some small wood chip fragments.
Sample taken at a 2cm depth in soil below leaves.
Temperature was 24.45 degrees Celsius.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedMar 21, 2012
Approximate Shotgun Coverage140
Genome length (bp)157482
Character of genome endsCircularly Permuted
GC Content64.6%
Fasta file available?Yes: Download fasta file
Characterization
ClusterC
SubclusterC1
Cluster Life CycleLytic
Other Cluster Members

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Ading (C1)

Adlitam (C1)

Alice (C1)

Amataga (C1)

ArcherS7 (C1)

Asterius (C1)

Astraea (C1)

Atlantean (C1)

Audrick (C1)

Ava3 (C1)

Babyland (C1)

BackyardAgain (C1)

BadAgartude (C1)

BananaFence (C1)

Bangla1971 (C1)

Basquiat (C1)

BeanWater (C1)

BigCity (C1)

Bigswole (C1)

Bipolarisk (C1)

Blackbrain (C1)

Blackdragon (C1)

Blubba (C1)

Bonray (C1)

Bread (C1)

Breeniome (C1)

Burrough (C1)

Bxz1 (C1)

Cactojaque (C1)

Cali (C1)

Cane17 (C1)

Capablanca (C1)

Caravan (C1)

Catera (C1)

Chargie21 (C1)

CharlieB (C1)

ChaylaJr (C1)

ChickenPhender (C1)

Chomp (C1)

CindyLou (C1)

Colt (C1)

Concombre (C1)

Daffodil (C1)

Dandelion (C1)

Darko (C1)

Delilah (C1)

Delylah (C1)

Demodog (C1)

Derek (C1)

Dietrick (C1)

DirtMonster (C1)

Domi (C1)

Drazdys (C1)

DrPhinkDaddy (C1)

DTDevon (C1)

EasyJones (C1)

EggyFarm (C1)

EmmaElysia (C1)

EmToTheThree (C1)

Erdmann (C1)

ErnieJ (C1)

Essence (C1)

ET08 (C1)

Ewok (C1)

Flabslab (C1)

Fludd (C1)

FoxtrotP1 (C1)

FrayBell (C1)

FudgeTart (C1)

Gabriel (C1)

Gamgam (C1)

Ghost (C1)

Gizmo (C1)

Grasshills (C1)

Grungle (C1)

Guwapp (C1)

Halldule (C1)

HyRo (C1)

I3 (C1)

IkeLoa (C1)

InigoMontoya (C1)

InterFolia (C1)

Iota (C1)

Issimir (C1)

Izajani (C1)

Janiyra (C1)

Jaygup (C1)

JayJay (C1)

Jedediah (C1)

Jemmno (C1)

Jessibeth14 (C1)

JigglyPuff (C1)

JPickles (C1)

JulietS (C1)

JustHall (C1)

Kamryn (C1)

Kboogie (C1)

Khaleesi (C1)

Koguma (C1)

Latch (C1)

Lee7 (C1)

LifeSavor (C1)

LinStu (C1)

Littleton (C1)

Loanshark (C1)

LolaVinca (C1)

LordLeafolot (C1)

LRRHood (C1)

Lukilu (C1)

Maby2021 (C1)

Mangeria (C1)

Matsumoto (C1)

McGee (C1)

McWolfish (C1)

Megamind (C1)

Melpomini (C1)

MikeLiesIn (C1)

Mikro (C1)

Momo (C1)

MoMoMixon (C1)

Morizzled23 (C1)

Naija (C1)

Napoleon13 (C1)

Nappy (C1)

Naval22 (C1)

NedWong (C1)

Ngannou (C1)

Nidhogg (C1)

NoodleTree (C1)

Norm (C1)

NuevoMundo (C1)

ParkTD (C1)

Patter (C1)

Phlegm (C1)

Phox (C1)

Phusco (C1)

Pier (C1)

Pinkcreek (C1)

Pio (C1)

Pivoine (C1)

Pleione (C1)

PurduePete (C1)

QBert (C1)

Quasimodo (C1)

Rabinovish (C1)

Rahel (C1)

Rizal (C1)

RoMag (C1)

Ronan (C1)

Roots515 (C1)

Salacia (C1)

Sauce (C1)

ScottMcG (C1)

Sebata (C1)

Shaqnato (C1)

Shelob (C1)

ShiaLabeouf (C1)

Shifa (C1)

Shnickers (C1)

Shrimp (C1)

SilverDipper (C1)

SmallFry (C1)

Spec (C1)

Specks (C1)

Sprinklers (C1)

Spud (C1)

SrishMeg2525 (C1)

StephanieG (C1)

Stubby (C1)

StubbySaigey (C1)

Tainan (C1)

Teardrop (C1)

TinyTim (C1)

Tonenili (C1)

Tortoise16 (C1)

Trinitium (C1)

Turret (C1)

Tyke (C1)

ValleyTerrace (C1)

Wally (C1)

Willis (C1)

Yassified (C1)

YemiJoy2021 (C1)

YoungMoneyMata (C1)

Yucca (C1)

Zalkecks (C1)

Zeenon (C1)

ZygoTaiga (C1)

Greely (C2)

Myrna (C2)

Phabba (C2)

ScoobyDoobyDoo (C2)

Annotating InstitutionUnknown or unassigned
Annotation StatusIn GenBank
Plaque NotesPlaque diameter is 1mm.
Plaque are clear.
MorphotypeMyoviridae
Number of Genes241
Number of tRNAs32
Number of tmRNAs1
Has been Phamerated?Yes
Gene List

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Gizmo_1

Gizmo_2

Gizmo_3
(nucleotidyltransferase)

Gizmo_4

Gizmo_5

Gizmo_6

Gizmo_7

Gizmo_8

Gizmo_9

Gizmo_10

Gizmo_11

Gizmo_12

Gizmo_13

Gizmo_14

Gizmo_15

Gizmo_16

Gizmo_17

Gizmo_18

Gizmo_19

Gizmo_20
(histidine triad nucleotide binding protein)

Gizmo_21

Gizmo_22

Gizmo_23

Gizmo_24

Gizmo_25

Gizmo_26

Gizmo_27

Gizmo_28

Gizmo_29

Gizmo_30

Gizmo_31
(band-7-like membrane protein)

Gizmo_32

Gizmo_33

Gizmo_34

Gizmo_35

Gizmo_36

Gizmo_37

Gizmo_38

Gizmo_39

Gizmo_40

Gizmo_41

Gizmo_42

Gizmo_43

Gizmo_44

Gizmo_45

Gizmo_46

Gizmo_47

Gizmo_48

Gizmo_49

Gizmo_50

Gizmo_51

Gizmo_52

Gizmo_53

Gizmo_54

Gizmo_55

Gizmo_56

Gizmo_57

Gizmo_58

Gizmo_59

Gizmo_60

Gizmo_61

Gizmo_62

Gizmo_63

Gizmo_64

Gizmo_65
(helix-turn-helix DNA binding domain protein)

Gizmo_66

Gizmo_67

Gizmo_68

Gizmo_69

Gizmo_70

Gizmo_71

Gizmo_72

Gizmo_73

Gizmo_74

Gizmo_75

Gizmo_76

Gizmo_77

Gizmo_78

Gizmo_79

Gizmo_80

Gizmo_81

Gizmo_82

Gizmo_83

Gizmo_84

Gizmo_85

Gizmo_86

Gizmo_87

Gizmo_88 — tRNA
(tRNA-Ser(gtc))

Gizmo_89 — tRNA
(tRNA-Leu(cag))

Gizmo_90 — tRNA
(tRNA-Leu(gag))

Gizmo_91 — tRNA
(tRNA-Leu(caa))

Gizmo_92

Gizmo_93

Gizmo_94
(portal protein)

Gizmo_95

Gizmo_96

Gizmo_97
(ThyX-like thymidylate synthase)

Gizmo_98

Gizmo_99
(RNA ligase)

Gizmo_100

Gizmo_101

Gizmo_102

Gizmo_103
(major capsid protein)

Gizmo_104

Gizmo_105

Gizmo_106

Gizmo_107

Gizmo_108

Gizmo_109

Gizmo_110

Gizmo_111

Gizmo_112

Gizmo_113

Gizmo_114

Gizmo_115

Gizmo_116

Gizmo_117

Gizmo_118

Gizmo_119

Gizmo_120

Gizmo_121

Gizmo_122

Gizmo_123

Gizmo_124

Gizmo_125

Gizmo_126
(HNH endonuclease)

Gizmo_127

Gizmo_128

Gizmo_129

Gizmo_130

Gizmo_131

Gizmo_132
(tail sheath protein)

Gizmo_133

Gizmo_134

Gizmo_135
(tail assembly chaperone)

Gizmo_136
(tail assembly chaperone)

Gizmo_137
(tape measure protein)

Gizmo_138

Gizmo_139

Gizmo_140

Gizmo_141
(minor tail protein)

Gizmo_142

Gizmo_143
(minor tail protein)

Gizmo_144
(baseplate wedge protein)

Gizmo_145
(baseplate J protein)

Gizmo_146

Gizmo_147

Gizmo_148

Gizmo_149

Gizmo_150
(minor tail protein)

Gizmo_151

Gizmo_152

Gizmo_153

Gizmo_154

Gizmo_155

Gizmo_156

Gizmo_157

Gizmo_158 — tRNA
(tRNA-Pro(tgg))

Gizmo_159 — tRNA
(tRNA- Tr; tRNA- Trp(cca))

Gizmo_160

Gizmo_161
(peptidyl tRNA hydrolase)

Gizmo_162 — tRNA
(tRNA- other(cta))

Gizmo_163 — tRNA
(tRNA- Met(cat))

Gizmo_164 — tRNA
(tRNA-Cys(gca))

Gizmo_165 — tRNA
(tRNA-Glu(ctc))

Gizmo_166 — tRNA
(tRNA-His(gtg))

Gizmo_167 — tRNA
(tRNA-Ala(tgc))

Gizmo_169 — tRNA
(tRNA-Phe(gaa))

Gizmo_170 — tRNA
(tRNA-Val(cac))

Gizmo_171 — tRNA
(tRNA-Lys(ctt))

Gizmo_172 — tRNA
(tRNA-Glu (ttc))

Gizmo_173 — tRNA
(tRNA-Gly(tcc))

Gizmo_174 — tRNA
(tRNA-Thr(cgt))

Gizmo_175 — tRNA
(tRNA-Thr(tgt))

Gizmo_176 — tRNA
(tRNA-Thr(ggt))

Gizmo_177
(minor tail protein)

Gizmo_178

Gizmo_179

Gizmo_180 — tRNA
(tRNA-Gly(gcc))

Gizmo_181 — tRNA
(tRNA-Asp(gtc))

Gizmo_182 — tRNA
(tRNA-Met(cat))

Gizmo_183 — tRNA
(tRNA-Ile(gat))

Gizmo_184 — tRNA
(tRNA-Arg(acg))

Gizmo_185 — tRNA
(tRNA-Val(gac))

Gizmo_186 — tRNA
(tRNA-Arg(cct))

Gizmo_187 — tmRNA
(tmRNA)

Gizmo_188 — tRNA
(tRNA-Gln(ttg))

Gizmo_189 — tRNA
(tRNA-Arg(tct))

Gizmo_190 — tRNA
(tRNA-Lys(ttt))

Gizmo_191

Gizmo_192

Gizmo_193
(DNA helicase)

Gizmo_194

Gizmo_195

Gizmo_196

Gizmo_197

Gizmo_198

Gizmo_199

Gizmo_200

Gizmo_201

Gizmo_202

Gizmo_203

Gizmo_204
(aminotransferase)

Gizmo_205

Gizmo_206

Gizmo_207

Gizmo_208
(DnaC-like helicase loader)

Gizmo_209
(DnaB-like dsDNA helicase)

Gizmo_210

Gizmo_211
(DNA primase)

Gizmo_212

Gizmo_213
(DnaJ-like chaperonin)

Gizmo_214

Gizmo_215
(DnaE-like DNA polymerase III)

Gizmo_216
(RF-1 peptide chain release factor)

Gizmo_217
(RecA-like DNA recombinase)

Gizmo_218

Gizmo_219

Gizmo_220
(HNH endonuclease)

Gizmo_221
(RusA-like resolvase)

Gizmo_222

Gizmo_223

Gizmo_224

Gizmo_225

Gizmo_226

Gizmo_227

Gizmo_228

Gizmo_229 — tRNA
(tRNA-Gln(ctg))

Gizmo_230 — tRNA
(tRNA-Asn(gtt))

Gizmo_231

Gizmo_232

Gizmo_233

Gizmo_234

Gizmo_235

Gizmo_236

Gizmo_275

Gizmo_237

Gizmo_238
(Ro-like RNA binding protein)

Gizmo_239

Gizmo_240

Gizmo_241

Gizmo_242

Gizmo_243

Gizmo_244

Gizmo_245
(glycosyltransferase)

Gizmo_246

Gizmo_247
(glycosyltransferase)

Gizmo_248
(glycosyltransferase)

Gizmo_249
(PnuC-like nicotinamide riboside transporter)

Gizmo_250
(glycosyltransferase)

Gizmo_251

Gizmo_252

Gizmo_253

Gizmo_254

Gizmo_255
(HNH endonuclease)

Gizmo_256
(lysin A)

Gizmo_257
(holin)

Gizmo_258
(lysin B)

Gizmo_259
(terminase)

Gizmo_260

Gizmo_261

Gizmo_262

Gizmo_263

Gizmo_264
(polynucleotide kinase)

Gizmo_265

Gizmo_266

Gizmo_267
(serine/threonine kinase)

Gizmo_268

Gizmo_269

Gizmo_270
(PurA-like adenylosuccinate synthetase)

Gizmo_271

Gizmo_272

Gizmo_273

Gizmo_274

Publication Info
Uploaded to GenBank?Yes
GenBank AccessionKC748968
Refseq NumberNC_021346
Published in PaperPope, Bowman, Russell, et al 2015, eLIFE: Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity
Archiving Info
Archiving status Archived
SEA Designator 2011ILWEgizmoEB
SEA Lysate Titer 1.03e11
Date of SEA Lysate Titering Oct 14, 2011
Pitt Freezer Box# 24
Pitt Freezer Box Grid# 2
Available Files
Plaque PictureDownload
EM PictureDownload