| Detailed Information for Phage Nidhogg |
| Discovery Information |
| Isolation Host | Mycobacterium smegmatis mc²155 |
| Found By | Sean Turner |
| Year Found | 2015 |
| Location Found | Raleigh, NC USA |
| Finding Institution | Durham Technical Community College |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | Yes |
| Isolation Temperature | 37°C |
| GPS Coordinates | 35.9754 N, 78.8803 W Map |
| Discovery Notes | Found in a grassy, semi-fertilized area, which floods. Pretty much all of the rain that falls on my house collects in this area, so it stays pretty wet. |
| Naming Notes | Largely panic, partially the germanic dragon of the same name. |
| Sequencing Information |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Nov 29, 2015 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Illumina |
| Approximate Shotgun Coverage | 790 |
| Genome length (bp) | 156342 |
| Character of genome ends | Circularly Permuted |
| GC Content | 64.7% |
| Fasta file available? | Yes: Download fasta file |
| Characterization |
| Cluster | C |
| Subcluster | C1 |
| Cluster Life Cycle | Lytic |
| Lysogeny Notes | The phage is quite lytic. When given time it will produce starkly defined plaques |
| Other Cluster Members |
|
| Annotating Institution | Durham Technical Community College |
| Annotation Status | In GenBank |
| Plaque Notes | The plaques pretty consistently stay .5mm to 1mm. They usually have quite clear, well defined edges. |
| Morphotype | Myoviridae |
| Number of Genes | 234 |
| Number of tRNAs | 33 |
| Number of tmRNAs | 1 |
| Has been Phamerated? | Yes |
| Gene List |
|
| Submitted Annotation in DNA Master Format | Download |
| Submitted Minimal DNA Master File | Download |
| Author List | Download |
| Annotation Cover Sheet | Download |
| Publication Info |
| Uploaded to GenBank? | Yes |
| GenBank Accession | MK359350 |
| Refseq Number | None yet |
| Archiving Info |
| Archiving status |
Archived |
| SEA Lysate Titer |
4.2*10^10 |
| Date of SEA Lysate Titering |
Oct 30, 2015 |
| Pitt Freezer Box# |
18 |
| Pitt Freezer Box Grid# |
A8 |
| Available Files |
| Final DNAMaster File | Download |
| GenBank File for Phamerator | Download |