| Detailed Information for Phage Phabba |
| Discovery Information |
| Isolation Host | Mycobacterium smegmatis mc²155 |
| Found By | Becca Wagner and Evan Bunnage |
| Year Found | 2014 |
| Location Found | Spokane, WA USA |
| Finding Institution | Gonzaga University |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | Yes |
| Isolation Temperature | 22°C |
| GPS Coordinates | 47.667702 N, 117.402889 W Map |
| Discovery Notes | - Soil from base of tree
- Wet soil with no grass or plant growth
- Collected 10:42 am 9/3/14
- Rained 1 hr prior to sample collection
- Air temp 11.11 degrees C
- Foot traffic travels over this area
- .997 grams of sample collected |
| Naming Notes | Inspired by Jabba the Hutt from Star Wars |
| Sequencing Information |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Feb 18, 2015 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Illumina |
| Sequencer Used | Illumina MiSeq |
| Read Type | Single-end reads |
| Read Length | 150 bp |
| Approximate Shotgun Coverage | 438 |
| Genome length (bp) | 164254 |
| Character of genome ends | Circularly Permuted |
| GC Content | 65.2% |
| Fasta file available? | Yes: Download fasta file |
| Characterization |
| Cluster | C |
| Subcluster | C2 |
| Cluster Life Cycle | Lytic |
| Other Cluster Members |
|
| Annotating Institution | Unknown or unassigned |
| Annotation Status | In GenBank |
| Plaque Notes | - Small plaques (.2-.8mm)
- Turbid plaque
- Round |
| Morphotype | Myoviridae |
| Number of Genes | 244 |
| Number of tRNAs | 37 |
| Number of tmRNAs | 1 |
| Has been Phamerated? | Yes |
| Gene List |
|
| Submitted Minimal DNA Master File | Download |
| Publication Info |
| Uploaded to GenBank? | Yes |
| GenBank Accession | MF668280 |
| Refseq Number | None yet |
| Archiving Info |
| Archiving status |
Archived |
| SEA Lysate Titer |
4.8 x 10^9 |
| Date of SEA Lysate Titering |
Oct 22, 2014 |
| Pitt Freezer Box# |
17 |
| Pitt Freezer Box Grid# |
A10 |
| Available Files |
| Plaque Picture | Download |
| EM Picture | Download |
| GenBank File for Phamerator | Download |
