Mycobacterium phage Clifton
Know something about this phage that we don't? Modify its data.
Detailed Information for Phage Clifton
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByIzabella Domian and Sydney Shearouse
Year Found2017
Location FoundClifton, NJ United States
Finding InstitutionUniversity of the Sciences in Philadelphia
ProgramUnavailable
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS Coordinates40.8989 N, 73.8734 W Map
Discovery NotesUrban location. Dirt is surrounded by many fruits, vegetables, and trees. Rain and foot traffic is common.
Naming NotesThe name is based on the location the phage sample was found
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 8, 2018
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage119
Genome length (bp)55727
Character of genome ends3' Sticky Overhang
Overhang Length10 bases
Overhang SequenceCGGAAGGCGC
GC Content61.7%
Fasta file available?Yes: Download fasta file
Characterization
ClusterF
SubclusterF1
Cluster Life CycleTemperate
Other Cluster Members

Click to View

AbbyNormal (None)

Grib (None)

Kishmeesh (None)

KitCat (None)

MightyMorph (None)

Puck (None)

Renaud18 (None)

WIVsmall1220 (None)

Alexphander (F1)

Anaxagorus (F1)

Ant1Dodson (F1)

ArcusAngelus (F1)

Ardmore (F1)

Arienne (F1)

Asmart (F1)

Awesomesauce (F1)

BabytheFifth (F1)

Barson (F1)

Batiatus (F1)

BigPhil (F1)

Bipolar (F1)

BobaPhett (F1)

Bobi (F1)

BodEinwohner17 (F1)

BoomCrackaPop (F1)

Boomer (F1)

Braemar (F1)

Brocalys (F1)

Bubbles123 (F1)

Burwell21 (F1)

BuzzLyseyear (F1)

ByChance (F1)

Byougenkin (F1)

Cabrinians (F1)

Cakepop (F1)

CaptainTrips (F1)

Cerasum (F1)

Che8 (F1)

Chhibber (F1)

Chikondi (F1)

Chuckly (F1)

Clifton (F1)

Clover (F1)

CoolGuy (F1)

Cornucopia (F1)

Daenerys (F1)

Danda (F1)

Dante (F1)

DaWorst (F1)

DCrust15 (F1)

DeadP (F1)

Desmond (F1)

DillTech15 (F1)

DirtMcgirt (F1)

DLane (F1)

Docouto (F1)

Dorothy (F1)

DotProduct (F1)

Drago (F1)

DRBy19 (F1)

Eish (F1)

EleanorGeorge (F1)

Emma (F1)

Empress (F1)

Enby (F1)

Estave1 (F1)

Estella (F1)

Fancypants (F1)

Filuzino (F1)

Firehouse51 (F1)

Flathead (F1)

Florinda (F1)

Frankie (F1)

Fruitloop (F1)

FunOne (F1)

Galactic (F1)

Gardregs (F1)

Gendisarray (F1)

Genesis (F1)

Geralt (F1)

Girafales (F1)

Girr (F1)

Gorge (F1)

GreatPumpkin (F1)

GUmbie (F1)

Hades (F1)

Hamulus (F1)

Harley (F1)

Hegedechwinu (F1)

Ibhubesi (F1)

Inventum (F1)

IrishSherpFalk (F1)

James (F1)

Job42 (F1)

JoeyJr (F1)

Judylove (F1)

Kalikimaka (F1)

Katya (F1)

Kersh (F1)

Kimberlium (F1)

KingMidas (F1)

Kingsley (F1)

Koella (F1)

Krakatau (F1)

KristaRAM (F1)

Latretium (F1)

LillyLatzon (F1)

LilMoolah (F1)

Lizziana (F1)

Llama (F1)

Llij (F1)

Lorde (F1)

Lysinator (F1)

MacDrage (F1)

Mahavrat (F1)

Mantra (F1)

Mattes (F1)

McDiddy (F1)

Melissauren88 (F1)

MerrillCO18 (F1)

Mille (F1)

MilleniumForce (F1)

MinionDave (F1)

Minnie (F1)

Misha28 (F1)

MisterCuddles (F1)

Mozy (F1)

Ms6 (F1)

Mutaforma13 (F1)

Myosotis (F1)

Nemain (F1)

Nimbo (F1)

Nitzel (F1)

Nivrat (F1)

Noodle (F1)

NormanBulbieJr (F1)

Ochi17 (F1)

OfUltron (F1)

Ogopogo (F1)

OldBen (F1)

OlympiaSaint (F1)

Ovechkin (F1)

OwlsT2W (F1)

Pacc40 (F1)

Peanut21s (F1)

Phabio (F1)

PHappiness (F1)

Phasih (F1)

Phatniss (F1)

PhrankthaTank (F1)

Piper2020 (F1)

Pippy (F1)

Plackberry (F1)

Plumbus (F1)

PMC (F1)

Poenanya (F1)

Polka14 (F1)

Pollywog (F1)

PopTart (F1)

Priscilla (F1)

Prometheus (F1)

QuickMath (F1)

Quico (F1)

Ramsey (F1)

RitaG (F1)

Rocktrap (F1)

RockyHorror (F1)

Rombolo (F1)

Royals2015 (F1)

Ruby (F1)

S2Kari (F1)

S2TSquared (F1)

Saal (F1)

SaltyMike (F1)

Sandalphon (F1)

SassyB (F1)

Scottish (F1)

Seagreen (F1)

SG4 (F1)

Sharpshooter (F1)

Shauna1 (F1)

SherL (F1)

ShiLan (F1)

SimranZ1 (F1)

SiSi (F1)

Sparkdehlily (F1)

Spartacus (F1)

Spikelee (F1)

Spoonbill (F1)

SuperGrey (F1)

SwagPigglett (F1)

Taj (F1)

Taus (F1)

TDanisky (F1)

TonaldTDrump (F1)

TootsiePop (F1)

Tweety (F1)

UncleRicky (F1)

Velveteen (F1)

Wachhund (F1)

Wee (F1)

WheatBerry18 (F1)

Whouxphf (F1)

WillSterrel (F1)

WIVsmall (F1)

XFactor (F1)

Zerg (F1)

Avani (F2)

Che9d (F2)

Demsculpinboyz (F2)

Jabbawokkie (F2)

Yoshi (F2)

Zapner (F2)

Squirty (F3)

TChen (F4)

ThetaBob (F4)

Cornie (F5)

Annotation StatusIn GenBank
Plaque NotesThe plaque is small (about 1 mm), clear, and appears to be density dependent
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

Click to View

Clifton_1
(terminase small subunit)

Clifton_2
(terminase large subunit)

Clifton_3
(portal protein)

Clifton_4
(capsid maturation protease)

Clifton_5
(scaffolding protein)

Clifton_6
(major capsid protein)

Clifton_7
(head-to-tail connector complex protein)

Clifton_8
(head-to-tail connector complex protein)

Clifton_9

Clifton_10
(head-to-tail connector complex protein)

Clifton_11
(major tail protein)

Clifton_12
(tail assembly chaperone)

Clifton_13
(tail assembly chaperone)

Clifton_14
(tape measure protein)

Clifton_15
(minor tail protein)

Clifton_16
(minor tail protein)

Clifton_17
(minor tail protein)

Clifton_18
(minor tail protein)

Clifton_19
(minor tail protein)

Clifton_20

Clifton_21

Clifton_22

Clifton_23

Clifton_24
(lysin A)

Clifton_25
(lysin B)

Clifton_26
(holin)

Clifton_27

Clifton_28

Clifton_29
(DNA polymerase III subunit)

Clifton_30

Clifton_31

Clifton_32

Clifton_33

Clifton_34

Clifton_35
(integrase)

Clifton_36
(RelE-like toxin)

Clifton_37
(RelB-like antitoxin)

Clifton_38

Clifton_39
(peptidase)

Clifton_40
(immunity repressor)

Clifton_41
(Cro protein)

Clifton_42
(antirepressor)

Clifton_43

Clifton_44

Clifton_45

Clifton_46

Clifton_47

Clifton_48

Clifton_49

Clifton_50

Clifton_51

Clifton_52
(WhiB family transcription factor)

Clifton_53

Clifton_54
(WhiB family transcription factor)

Clifton_55
(helix-turn-helix DNA binding domain protein)

Clifton_56

Clifton_57

Clifton_58

Clifton_59
(AAA-ATPase)

Clifton_60
(HNH endonuclease)

Clifton_61
(DNA methylase)

Clifton_62

Clifton_63

Clifton_64

Clifton_65

Clifton_66
(G-I-Y Y-I-G endonuclease)

Clifton_67

Clifton_68

Clifton_69

Clifton_70

Clifton_71

Clifton_72

Clifton_73

Clifton_74

Clifton_75

Clifton_76
(MPME 1 protein)

Clifton_77

Clifton_78

Clifton_79

Clifton_80

Clifton_81

Clifton_82

Clifton_83
(G-I-Y Y-I-G endonuclease)

Clifton_84

Clifton_85

Clifton_86

Clifton_87

Clifton_88

Clifton_89

Clifton_90

Clifton_91

Clifton_92

Clifton_93
(glycosyltransferase)

Clifton_94

Clifton_95
(glycosyltransferase)

Clifton_96
(HNH endonuclease)

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMH371115
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 47
Pitt Freezer Box Grid# B12
Available Files
Plaque PictureDownload
GenBank File for PhameratorDownload