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BayC (BG) Nesbitt (BL) Azathoth (AN) Copper (AN) Sibs6 (A1)
Mycobacterium phage DotProduct
Know something about this phage that we don't? Modify its data.
Detailed Information for Phage DotProduct
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByAndryus Planutis/Mahathee Chetapalli
Year Found2009
Location FoundIrvine, CA USA
Finding InstitutionUniversity of California, San Diego
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?No
Isolation TemperatureNot entered
GPS Coordinates33.64035 N, 117.83217 W Map
Discovery NotesLocated UC Irvine Community Gardens. It was a moist compost, well, tended, in bin with ventilation holes. Soil depth was 10cm at 86 degrees.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedMar 17, 2011
Sequencing FacilityJoint Genomics Institute
Genome length (bp)55363
Character of genome ends3' Sticky Overhang
Overhang Length10 bases
Overhang SequenceCGGAAGGCGC
GC Content61.8%
Fasta file available?Yes: Download fasta file
Characterization
ClusterF
SubclusterF1
Other Cluster Members

Click to View

AbbyNormal (None)

Grib (None)

Kishmeesh (None)

KitCat (None)

MightyMorph (None)

Puck (None)

WIVsmall1220 (None)

Alexphander (F1)

Anaxagorus (F1)

Ant1Dodson (F1)

ArcusAngelus (F1)

Ardmore (F1)

Arienne (F1)

Asmart (F1)

Awesomesauce (F1)

Barson (F1)

Batiatus (F1)

BigPhil (F1)

Bipolar (F1)

BobaPhett (F1)

Bobi (F1)

Boomer (F1)

Braemar (F1)

Brocalys (F1)

Bubbles123 (F1)

BuzzLyseyear (F1)

Byougenkin (F1)

Cabrinians (F1)

Cakepop (F1)

CaptainTrips (F1)

Cerasum (F1)

Che8 (F1)

Chhibber (F1)

Chikondi (F1)

Chuckly (F1)

Clover (F1)

CoolGuy (F1)

Cornucopia (F1)

Daenerys (F1)

Danda (F1)

Dante (F1)

DaWorst (F1)

DCrust15 (F1)

DeadP (F1)

Desmond (F1)

DillTech15 (F1)

DirtMcgirt (F1)

DLane (F1)

Docouto (F1)

Dorothy (F1)

DotProduct (F1)

Drago (F1)

DRBy19 (F1)

Emma (F1)

Empress (F1)

Estave1 (F1)

Estella (F1)

Filuzino (F1)

Firehouse51 (F1)

Flathead (F1)

Florinda (F1)

Frankie (F1)

Fruitloop (F1)

FunOne (F1)

Galactic (F1)

Gardregs (F1)

Gendisarray (F1)

Genesis (F1)

Geralt (F1)

Girafales (F1)

Girr (F1)

GUmbie (F1)

Hades (F1)

Hamulus (F1)

Harley (F1)

Hegedechwinu (F1)

Ibhubesi (F1)

Inventum (F1)

IrishSherpFalk (F1)

James (F1)

Job42 (F1)

Judylove (F1)

Kalikimaka (F1)

Kersh (F1)

Kimberlium (F1)

KingMidas (F1)

Kingsley (F1)

Koella (F1)

Krakatau (F1)

KristaRAM (F1)

LillyLatzon (F1)

Llama (F1)

Llij (F1)

Lysinator (F1)

MacDrage (F1)

Mahavrat (F1)

Mantra (F1)

Mattes (F1)

McDiddy (F1)

Melissauren88 (F1)

MilleniumForce (F1)

MinionDave (F1)

Minnie (F1)

Misha28 (F1)

MisterCuddles (F1)

Mozy (F1)

Mutaforma13 (F1)

Nemain (F1)

Nitzel (F1)

Noodle (F1)

OfUltron (F1)

Ogopogo (F1)

OldBen (F1)

OlympiaSaint (F1)

Ovechkin (F1)

OwlsT2W (F1)

Pacc40 (F1)

Peanut21s (F1)

Phabio (F1)

Phasih (F1)

Phatniss (F1)

PhrankthaTank (F1)

Piper2020 (F1)

Pippy (F1)

Plackberry (F1)

Plumbus (F1)

PMC (F1)

Polka14 (F1)

PopTart (F1)

Priscilla (F1)

Prometheus (F1)

Quico (F1)

Ramsey (F1)

RitaG (F1)

Rocktrap (F1)

RockyHorror (F1)

Rombolo (F1)

Royals2015 (F1)

Ruby (F1)

S2Kari (F1)

S2TSquared (F1)

Saal (F1)

SaltyMike (F1)

SassyB (F1)

Scottish (F1)

Seagreen (F1)

SG4 (F1)

Sharpshooter (F1)

Shauna1 (F1)

SherL (F1)

ShiLan (F1)

SimranZ1 (F1)

SiSi (F1)

Sparkdehlily (F1)

Spartacus (F1)

Spoonbill (F1)

SuperGrey (F1)

SwagPigglett (F1)

Taj (F1)

TDanisky (F1)

TootsiePop (F1)

Tweety (F1)

UncleRicky (F1)

Velveteen (F1)

Wachhund (F1)

Wee (F1)

WheatBerry18 (F1)

Whouxphf (F1)

WillSterrel (F1)

WIVsmall (F1)

XFactor (F1)

Zerg (F1)

Avani (F2)

Che9d (F2)

Demsculpinboyz (F2)

Jabbawokkie (F2)

Yoshi (F2)

Zapner (F2)

Squirty (F3)

TChen (F4)

Cornie (F5)

Plaque Notes4mm diameter/clear dot plaques after 24 hours of incubation, turned into bulls-eye plaques after 24 more hours of incubation ( total incubation 48 hours). at 37 degrees Celsius.
MorphotypeSiphoviridae
Final annotation complete?Yes
Number of Genes95
Has been Phamerated?Yes
Gene List

Click to View

DotProduct_1
(Terminase, small subunit)

DotProduct_2
(Terminase, large subunit)

DotProduct_3
(Portal)

DotProduct_4
(Head Assembly Protease)

DotProduct_5
(Scaffolding)

DotProduct_6
(Major Capsid)

DotProduct_7

DotProduct_8

DotProduct_9

DotProduct_10

DotProduct_11
(major tail subunit)

DotProduct_12
(Tail Assembly Chaperone)

DotProduct_13
(Tail Assembly Chaperone)

DotProduct_14
(Tapemeasure)

DotProduct_15

DotProduct_16

DotProduct_17

DotProduct_18
(Major Tail Subunit)

DotProduct_19
(D-ala-Dala-carboxypeptidase)

DotProduct_20

DotProduct_21

DotProduct_22

DotProduct_23

DotProduct_24

DotProduct_25

DotProduct_26

DotProduct_27

DotProduct_28

DotProduct_29

DotProduct_30
(Lys A)

DotProduct_31
(Lys B)

DotProduct_32
(Holin)

DotProduct_33

DotProduct_34

DotProduct_35
(DnaQ-like)

DotProduct_36

DotProduct_37

DotProduct_38

DotProduct_39

DotProduct_40
(Integrase (Y-Int))

DotProduct_41

DotProduct_42

DotProduct_43
(HTH domain)

DotProduct_44
(Antirepressor)

DotProduct_45

DotProduct_46

DotProduct_47

DotProduct_48

DotProduct_49

DotProduct_50

DotProduct_51

DotProduct_52
(WhiB)

DotProduct_53
(HTH domain)

DotProduct_54

DotProduct_55
(WhiB)

DotProduct_56

DotProduct_57

DotProduct_58

DotProduct_59

DotProduct_60
(HNH endonuclease)

DotProduct_61

DotProduct_62

DotProduct_63

DotProduct_64

DotProduct_65

DotProduct_66

DotProduct_67

DotProduct_68

DotProduct_69

DotProduct_70

DotProduct_71

DotProduct_72

DotProduct_73

DotProduct_74

DotProduct_75

DotProduct_76

DotProduct_77

DotProduct_78

DotProduct_79

DotProduct_80

DotProduct_81

DotProduct_82

DotProduct_83

DotProduct_84

DotProduct_85

DotProduct_86

DotProduct_87

DotProduct_88
(MerR-like)

DotProduct_89

DotProduct_90

DotProduct_91

DotProduct_92

DotProduct_93

DotProduct_94

DotProduct_95
(Polypeptide N-acetylgalactosaminyltransferase)

DotProduct_96
(Ser/Thr Kinase)

DotProduct_97

DotProduct_98
(N- acetylglucosaminyltransferase)

Publication Info
Uploaded to GenBank?Yes
GenBank AccessionJN859129
Refseq NumberNone yet
Published in PaperPope, Bowman, Russell, et al 2015, eLIFE
Available Files
Virtual Digest PictureDownload
EM PictureDownload