Mycobacterium phage ShiLan
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Detailed Information for Phage ShiLan
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByKaren Kantor & Hao-yi Wang
Year Found2009
Location FoundRichmond, VA USA
Finding InstitutionVirginia Commonwealth University
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Unknown
Isolation TemperatureNot entered
GPS Coordinates37.690947 N, 77.663839 W Map
Discovery NotesIsolated from kitchen worm bin, 71°F.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedMar 9, 2011
Genome length (bp)59794
Character of genome ends3' Sticky Overhang
Overhang Length10 bp
Overhang SequenceCGGAAGGCGC
GC Content61.4%
Fasta file available?Yes: Download fasta file
Characterization
ClusterF
SubclusterF1
Other Cluster Members

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AbbyNormal (None)

Grib (None)

Kishmeesh (None)

KitCat (None)

MightyMorph (None)

Puck (None)

WIVsmall1220 (None)

Alexphander (F1)

Anaxagorus (F1)

Ant1Dodson (F1)

ArcusAngelus (F1)

Ardmore (F1)

Arienne (F1)

Asmart (F1)

Awesomesauce (F1)

Batiatus (F1)

BigPhil (F1)

Bipolar (F1)

BobaPhett (F1)

Bobi (F1)

Boomer (F1)

Braemar (F1)

Brocalys (F1)

Bubbles123 (F1)

BuzzLyseyear (F1)

Byougenkin (F1)

Cabrinians (F1)

Cakepop (F1)

CaptainTrips (F1)

Cerasum (F1)

Che8 (F1)

Chhibber (F1)

Chikondi (F1)

Chuckly (F1)

Clover (F1)

CoolGuy (F1)

Cornucopia (F1)

Daenerys (F1)

Danda (F1)

Dante (F1)

DaWorst (F1)

DCrust15 (F1)

DeadP (F1)

Desmond (F1)

DillTech15 (F1)

DirtMcgirt (F1)

DLane (F1)

Docouto (F1)

Dorothy (F1)

DotProduct (F1)

Drago (F1)

DRBy19 (F1)

Emma (F1)

Empress (F1)

Estave1 (F1)

Estella (F1)

Filuzino (F1)

Firehouse51 (F1)

Flathead (F1)

Florinda (F1)

Frankie (F1)

Fruitloop (F1)

FunOne (F1)

Galactic (F1)

Gardregs (F1)

Gendisarray (F1)

Genesis (F1)

Geralt (F1)

Girafales (F1)

Girr (F1)

GUmbie (F1)

Hades (F1)

Hamulus (F1)

Harley (F1)

Hegedechwinu (F1)

Ibhubesi (F1)

Inventum (F1)

IrishSherpFalk (F1)

James (F1)

Job42 (F1)

Judylove (F1)

Kalikimaka (F1)

Kersh (F1)

Kimberlium (F1)

KingMidas (F1)

Kingsley (F1)

Koella (F1)

Krakatau (F1)

KristaRAM (F1)

LillyLatzon (F1)

Llama (F1)

Llij (F1)

Lysinator (F1)

MacDrage (F1)

Mantra (F1)

Mattes (F1)

McDiddy (F1)

Melissauren88 (F1)

MilleniumForce (F1)

MinionDave (F1)

Minnie (F1)

Misha28 (F1)

MisterCuddles (F1)

Mozy (F1)

Mutaforma13 (F1)

Nemain (F1)

Nitzel (F1)

Noodle (F1)

Ogopogo (F1)

OldBen (F1)

OlympiaSaint (F1)

Ovechkin (F1)

OwlsT2W (F1)

Pacc40 (F1)

Phabio (F1)

Phasih (F1)

Phatniss (F1)

PhrankthaTank (F1)

Piper2020 (F1)

Pippy (F1)

Plackberry (F1)

Plumbus (F1)

PMC (F1)

Polka14 (F1)

PopTart (F1)

Priscilla (F1)

Prometheus (F1)

Quico (F1)

Ramsey (F1)

RitaG (F1)

Rocktrap (F1)

RockyHorror (F1)

Rombolo (F1)

Royals2015 (F1)

Ruby (F1)

S2Kari (F1)

S2TSquared (F1)

Saal (F1)

SaltyMike (F1)

SassyB (F1)

Scottish (F1)

Seagreen (F1)

SG4 (F1)

Sharpshooter (F1)

Shauna1 (F1)

SherL (F1)

ShiLan (F1)

SimranZ1 (F1)

SiSi (F1)

Sparkdehlily (F1)

Spartacus (F1)

Spoonbill (F1)

SuperGrey (F1)

SwagPigglett (F1)

Taj (F1)

TootsiePop (F1)

Tweety (F1)

UncleRicky (F1)

Velveteen (F1)

Wachhund (F1)

Wee (F1)

Whouxphf (F1)

WillSterrel (F1)

WIVsmall (F1)

XFactor (F1)

Zerg (F1)

Avani (F2)

Che9d (F2)

Demsculpinboyz (F2)

Jabbawokkie (F2)

Yoshi (F2)

Zapner (F2)

Squirty (F3)

TChen (F4)

Cornie (F5)

Plaque Notes1 mm, pinpoint clear plaques in spot-test, and at high concentration. 2-2.5 mm, clear plaques when well-isolated.
MorphotypeSiphoviridae
Final annotation complete?Yes
Number of Genes105
Has been Phamerated?Yes
Gene List

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ShiLan_1
(terminase, small subunit)

ShiLan_2
(Terminase, large subunit)

ShiLan_3
(Portal)

ShiLan_4
(Capsid maturation protease)

ShiLan_5
(Scaffold)

ShiLan_6
(Major Capsid)

ShiLan_7

ShiLan_8

ShiLan_9

ShiLan_10

ShiLan_11
(Major tail subunit)

ShiLan_12
(Tail assembly chaperone)

ShiLan_13
(tail assembly chaperone)

ShiLan_14
(Tapemeasure)

ShiLan_15
(minor tail subunit)

ShiLan_16
(minor tail subunit)

ShiLan_17
(minor tail subunit)

ShiLan_18
(minor tail subunit)

ShiLan_19
(D-ala-D-ala carboxypeptidase)

ShiLan_20

ShiLan_21

ShiLan_22

ShiLan_23

ShiLan_24

ShiLan_25

ShiLan_26

ShiLan_27

ShiLan_28

ShiLan_29

ShiLan_30
(LysA)

ShiLan_31
(LysB)

ShiLan_32
(holin)

ShiLan_33

ShiLan_34

ShiLan_35
(DnaQ-like)

ShiLan_36

ShiLan_37

ShiLan_38

ShiLan_39

ShiLan_40

ShiLan_41

ShiLan_42

ShiLan_43

ShiLan_44
(Integrase (Y-int))

ShiLan_45

ShiLan_46

ShiLan_47
(DNA binding domain (XRE family transcriptional regulator))

ShiLan_48

ShiLan_49

ShiLan_50

ShiLan_51

ShiLan_52

ShiLan_53

ShiLan_54

ShiLan_55

ShiLan_56
(WhiB)

ShiLan_57

ShiLan_58
(WhiB)

ShiLan_59

ShiLan_60

ShiLan_61

ShiLan_62

ShiLan_63

ShiLan_64
(HNH endonuclease domain)

ShiLan_65
(DNA methylase)

ShiLan_66

ShiLan_67
(DNA methylase-)

ShiLan_68

ShiLan_69

ShiLan_70
(DNA methylase)

ShiLan_71

ShiLan_72

ShiLan_73

ShiLan_74

ShiLan_75

ShiLan_76

ShiLan_77

ShiLan_78

ShiLan_79

ShiLan_80

ShiLan_81

ShiLan_82

ShiLan_83

ShiLan_84

ShiLan_85

ShiLan_86

ShiLan_87

ShiLan_88

ShiLan_89

ShiLan_90

ShiLan_91

ShiLan_92

ShiLan_93

ShiLan_94
(GIY-YIG endonuclease)

ShiLan_95

ShiLan_96

ShiLan_97

ShiLan_98

ShiLan_99

ShiLan_100

ShiLan_101

ShiLan_102

ShiLan_103

ShiLan_104
(polypeptide N-acetylgalactosaminyl transferase)

ShiLan_105

ShiLan_106
(N-acetylglucosaminyl transferase)

ShiLan_107
(HNH endonuclease domain)

Publication Info
Uploaded to GenBank?Yes
GenBank AccessionJN020143
Refseq NumberNone yet
Published in PaperPope, Bowman, Russell, et al 2015, eLIFE
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
EM PictureDownload