Mycobacterium phage Ruby
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Detailed Information for Phage Ruby
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByJeremy Davis, Patrick Coyne
Year Found2010
Location FoundSaint Louis, MO USA
Finding InstitutionWashington University in St. Louis
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS Coordinates38.631589 N, 90.291169 W Map
Discovery NotesDamp Mulch, about 4 inches down, 80°F, on 9/5/10 at 3:13 PM.
Found in Forest Park, Saint Louis, Missouri on a playground.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedOct 10, 2013
Sequencing FacilityThe McDonnell Genome Institute at Washington University
Shotgun Sequencing Method454 Pyrosequencing
Approximate Shotgun Coverage79
Sanger Finishing Reactions12
Genome length (bp)57726
Character of genome ends3' Sticky Overhang
Overhang Length10 bases
Overhang SequenceCGGAAGGCGC
GC Content61.4%
Fasta file available?Yes: Download fasta file
Characterization
ClusterF
SubclusterF1
Cluster Life CycleTemperate
Other Cluster Members

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AbbyNormal (None)

Grib (None)

Kishmeesh (None)

KitCat (None)

MightyMorph (None)

Puck (None)

Renaud18 (None)

WIVsmall1220 (None)

Alexphander (F1)

Anaxagorus (F1)

Ant1Dodson (F1)

ArcusAngelus (F1)

Ardmore (F1)

Arienne (F1)

Asmart (F1)

Awesomesauce (F1)

BabytheFifth (F1)

Barson (F1)

Batiatus (F1)

BigPhil (F1)

Bipolar (F1)

BobaPhett (F1)

Bobi (F1)

BodEinwohner17 (F1)

BoomCrackaPop (F1)

Boomer (F1)

Braemar (F1)

Brocalys (F1)

Bubbles123 (F1)

Burwell21 (F1)

BuzzLyseyear (F1)

ByChance (F1)

Byougenkin (F1)

Cabrinians (F1)

Cakepop (F1)

CaptainTrips (F1)

Cerasum (F1)

Che8 (F1)

Chhibber (F1)

Chikondi (F1)

Chuckly (F1)

Clifton (F1)

Clover (F1)

CoolGuy (F1)

Cornucopia (F1)

Daenerys (F1)

Danda (F1)

Dante (F1)

DaWorst (F1)

DCrust15 (F1)

DeadP (F1)

Desmond (F1)

DillTech15 (F1)

DirtMcgirt (F1)

DLane (F1)

Docouto (F1)

Dorothy (F1)

DotProduct (F1)

Drago (F1)

DRBy19 (F1)

Eish (F1)

EleanorGeorge (F1)

Emma (F1)

Empress (F1)

Enby (F1)

Estave1 (F1)

Estella (F1)

Fancypants (F1)

Filuzino (F1)

Firehouse51 (F1)

Flathead (F1)

Florinda (F1)

Frankie (F1)

Fruitloop (F1)

FunOne (F1)

Galactic (F1)

Gardregs (F1)

Gendisarray (F1)

Genesis (F1)

Geralt (F1)

Girafales (F1)

Girr (F1)

Gorge (F1)

GreatPumpkin (F1)

GUmbie (F1)

Hades (F1)

Hamulus (F1)

Harley (F1)

Hegedechwinu (F1)

Ibhubesi (F1)

Inventum (F1)

IrishSherpFalk (F1)

James (F1)

Job42 (F1)

JoeyJr (F1)

Judylove (F1)

Kalikimaka (F1)

Katya (F1)

Kersh (F1)

Kimberlium (F1)

KingMidas (F1)

Kingsley (F1)

Koella (F1)

Krakatau (F1)

KristaRAM (F1)

Latretium (F1)

LillyLatzon (F1)

LilMoolah (F1)

Lizziana (F1)

Llama (F1)

Llij (F1)

Lorde (F1)

Lysinator (F1)

MacDrage (F1)

Mahavrat (F1)

Mantra (F1)

Mattes (F1)

McDiddy (F1)

Melissauren88 (F1)

MerrillCO18 (F1)

Mille (F1)

MilleniumForce (F1)

MinionDave (F1)

Minnie (F1)

Misha28 (F1)

MisterCuddles (F1)

Modragons (F1)

Mozy (F1)

Ms6 (F1)

Mutaforma13 (F1)

Myosotis (F1)

Nemain (F1)

Nimbo (F1)

Nitzel (F1)

Nivrat (F1)

Noodle (F1)

NormanBulbieJr (F1)

Ochi17 (F1)

OfUltron (F1)

Ogopogo (F1)

OldBen (F1)

OlympiaSaint (F1)

Ovechkin (F1)

OwlsT2W (F1)

Pacc40 (F1)

Peanut21s (F1)

Phabio (F1)

PHappiness (F1)

Phasih (F1)

Phatniss (F1)

PhrankthaTank (F1)

Piper2020 (F1)

Pippy (F1)

Plackberry (F1)

Plumbus (F1)

PMC (F1)

Poenanya (F1)

Polka14 (F1)

Pollywog (F1)

PopTart (F1)

Priscilla (F1)

Prometheus (F1)

QuickMath (F1)

Quico (F1)

Ramsey (F1)

RitaG (F1)

Rocktrap (F1)

RockyHorror (F1)

Rombolo (F1)

Royals2015 (F1)

Ruby (F1)

S2Kari (F1)

S2TSquared (F1)

Saal (F1)

SaltyMike (F1)

Sandalphon (F1)

SassyB (F1)

Scottish (F1)

Seagreen (F1)

SG4 (F1)

Sharpshooter (F1)

Shauna1 (F1)

SherL (F1)

ShiLan (F1)

SimranZ1 (F1)

SiSi (F1)

Sparkdehlily (F1)

Spartacus (F1)

Spikelee (F1)

Spoonbill (F1)

Strokeseat (F1)

SuperGrey (F1)

SwagPigglett (F1)

Taj (F1)

Taus (F1)

TDanisky (F1)

TonaldTDrump (F1)

TootsiePop (F1)

Tweety (F1)

UncleRicky (F1)

Velveteen (F1)

Wachhund (F1)

Wee (F1)

WheatBerry18 (F1)

Whouxphf (F1)

WillSterrel (F1)

WIVsmall (F1)

XFactor (F1)

Zerg (F1)

Avani (F2)

Che9d (F2)

Demsculpinboyz (F2)

Jabbawokkie (F2)

Yoshi (F2)

Zapner (F2)

Squirty (F3)

TChen (F4)

ThetaBob (F4)

Cornie (F5)

Annotation StatusIn GenBank
Plaque NotesMedium small (1 mm), very clear with relatively uniform plaques.
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

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Ruby_1
(terminase small subunit)

Ruby_2
(terminase large subunit)

Ruby_3
(portal protein)

Ruby_4
(capsid maturation protease)

Ruby_5
(scaffolding protein)

Ruby_6
(major capsid protein)

Ruby_7
(head-to-tail connector complex protein)

Ruby_8
(head-to-tail connector complex protein)

Ruby_9

Ruby_10
(head-to-tail connector complex protein)

Ruby_11

Ruby_12
(tail assembly chaperone)

Ruby_13
(tail assembly chaperone)

Ruby_14
(tape measure protein)

Ruby_15
(minor tail protein)

Ruby_16
(minor tail protein)

Ruby_17
(minor tail protein)

Ruby_18
(minor tail protein)

Ruby_19
(minor tail protein)

Ruby_20
(minor tail protein)

Ruby_21

Ruby_22

Ruby_23

Ruby_24

Ruby_25
(helix-turn-helix DNA binding domain protein)

Ruby_26

Ruby_27

Ruby_28

Ruby_29

Ruby_30

Ruby_31
(lysin A)

Ruby_32
(HNH endonuclease)

Ruby_33
(lysin B)

Ruby_34
(holin)

Ruby_35

Ruby_36

Ruby_37
(DnaQ-like exonuclease)

Ruby_38

Ruby_39

Ruby_40

Ruby_41

Ruby_42
(integrase)

Ruby_43

Ruby_44
(immunity repressor)

Ruby_45
(Cro protein)

Ruby_46
(antirepressor)

Ruby_47

Ruby_48
(excise)

Ruby_49

Ruby_50

Ruby_51

Ruby_52

Ruby_53
(WhiB family transcription factor)

Ruby_54

Ruby_55
(WhiB family transcription factor)

Ruby_56
(helix-turn-helix DNA binding domain protein)

Ruby_57

Ruby_58

Ruby_59

Ruby_60

Ruby_61
(HNH endonuclease)

Ruby_62
(DNA helicase)

Ruby_63

Ruby_64

Ruby_65

Ruby_66

Ruby_67

Ruby_68

Ruby_69

Ruby_70

Ruby_71

Ruby_72

Ruby_73

Ruby_74

Ruby_75

Ruby_76

Ruby_77

Ruby_78
(MPME1 protein)

Ruby_79

Ruby_80

Ruby_81

Ruby_82

Ruby_83

Ruby_84

Ruby_85

Ruby_86

Ruby_87

Ruby_88

Ruby_89

Ruby_90

Ruby_91

Ruby_93

Ruby_94

Ruby_95

Ruby_96

Ruby_97
(glycosyltransferase)

Ruby_98

Ruby_99
(glycosyltransferase)

Ruby_100
(HNH endonuclease)

Submitted Annotation in DNA Master FormatDownload
Submitted Minimal DNA Master FileDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMH651188
Refseq NumberNone yet
Published in PaperPope, Bowman, Russell, et al 2015, eLIFE: Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity
Archiving Info
Archiving status Archived
SEA Designator WUSL
Pitt Freezer Box# 20
Pitt Freezer Box Grid# 33
Available Files
Plaque PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload