Mycobacterium phage SimranZ1
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Detailed Information for Phage SimranZ1
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found BySimran Virdi (B.Sc. (Hons) Biomedical Science.
Year Found2016
Location FoundNew Delhi, India
Finding InstitutionAcharya Narendra Dev College
ProgramPhage Hunters Integrating Research and Education
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS CoordinatesUnavailable
Discovery NotesIsolated from a soil sample procured from Hauz Khaas, New Delhi in a state called Delhi. The protocol followed for isolation of the Mycobacteriophages was as described in the manual "Phagehunting Teacher Workshop-2012". The work was carried out in Dr.Urmi Bajpai's laboratary at department of Biomedical Science, Acharya Narendra Dev College, University of Delhi under the PHAGE DISCOVERY Research Project (PDRP).
Naming NotesThe name of the phage is kept by the student Simran Virdi, B.Sc. (Hons) Biomedical Science, who worked and discovered the Mycobacteriophage from the soil samples as a part of PHAGE DISCOVERY RESEARCH PROJECT (PDRP). The first six letters of "SimranZ1" are taken from the name of the student: Simran and the letters Z1 stands for the isolate name. Alternative name for this phage is PDRPxvi
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedMay 3, 2016
Genome length (bp)56335
Character of genome endsUnknown
Overhang Length10 bases
Overhang SequenceCCGAAGGCAT
GC Content61.3%
Fasta file available?Yes: Download fasta file
Characterization
ClusterF
SubclusterF1
Cluster Life CycleTemperate
Other Cluster Members

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AbbyNormal (None)

Grib (None)

Kishmeesh (None)

KitCat (None)

MightyMorph (None)

Puck (None)

Renaud18 (None)

WIVsmall1220 (None)

Alexphander (F1)

Anaxagorus (F1)

Ant1Dodson (F1)

ArcusAngelus (F1)

Ardmore (F1)

Arienne (F1)

Asmart (F1)

Awesomesauce (F1)

BabytheFifth (F1)

Barson (F1)

Batiatus (F1)

BigPhil (F1)

Bipolar (F1)

BobaPhett (F1)

Bobi (F1)

BodEinwohner17 (F1)

BoomCrackaPop (F1)

Boomer (F1)

Braemar (F1)

Brocalys (F1)

Bubbles123 (F1)

Burwell21 (F1)

BuzzLyseyear (F1)

ByChance (F1)

Byougenkin (F1)

Cabrinians (F1)

Cakepop (F1)

CaptainTrips (F1)

Cerasum (F1)

Che8 (F1)

Chhibber (F1)

Chikondi (F1)

Chuckly (F1)

Clifton (F1)

Clover (F1)

CoolGuy (F1)

Cornucopia (F1)

Daenerys (F1)

Danda (F1)

Dante (F1)

DaWorst (F1)

DCrust15 (F1)

DeadP (F1)

Desmond (F1)

DillTech15 (F1)

DirtMcgirt (F1)

DLane (F1)

Docouto (F1)

Dorothy (F1)

DotProduct (F1)

Drago (F1)

DRBy19 (F1)

Eish (F1)

EleanorGeorge (F1)

Emma (F1)

Empress (F1)

Enby (F1)

Estave1 (F1)

Estella (F1)

Filuzino (F1)

Firehouse51 (F1)

Flathead (F1)

Florinda (F1)

Frankie (F1)

Fruitloop (F1)

FunOne (F1)

Galactic (F1)

Gardregs (F1)

Gendisarray (F1)

Genesis (F1)

Geralt (F1)

Girafales (F1)

Girr (F1)

Gorge (F1)

GreatPumpkin (F1)

GUmbie (F1)

Hades (F1)

Hamulus (F1)

Harley (F1)

Hegedechwinu (F1)

Ibhubesi (F1)

Inventum (F1)

IrishSherpFalk (F1)

James (F1)

Job42 (F1)

JoeyJr (F1)

Judylove (F1)

Kalikimaka (F1)

Katya (F1)

Kersh (F1)

Kimberlium (F1)

KingMidas (F1)

Kingsley (F1)

Koella (F1)

Krakatau (F1)

KristaRAM (F1)

Latretium (F1)

LillyLatzon (F1)

LilMoolah (F1)

Lizziana (F1)

Llama (F1)

Llij (F1)

Lorde (F1)

Lysinator (F1)

MacDrage (F1)

Mahavrat (F1)

Mantra (F1)

Mattes (F1)

McDiddy (F1)

Melissauren88 (F1)

MerrillCO18 (F1)

Mille (F1)

MilleniumForce (F1)

MinionDave (F1)

Minnie (F1)

Misha28 (F1)

MisterCuddles (F1)

Mozy (F1)

Mutaforma13 (F1)

Myosotis (F1)

Nemain (F1)

Nimbo (F1)

Nitzel (F1)

Nivrat (F1)

Noodle (F1)

NormanBulbieJr (F1)

Ochi17 (F1)

OfUltron (F1)

Ogopogo (F1)

OldBen (F1)

OlympiaSaint (F1)

Ovechkin (F1)

OwlsT2W (F1)

Pacc40 (F1)

Peanut21s (F1)

Phabio (F1)

PHappiness (F1)

Phasih (F1)

Phatniss (F1)

PhrankthaTank (F1)

Piper2020 (F1)

Pippy (F1)

Plackberry (F1)

Plumbus (F1)

PMC (F1)

Poenanya (F1)

Polka14 (F1)

Pollywog (F1)

PopTart (F1)

Priscilla (F1)

Prometheus (F1)

QuickMath (F1)

Quico (F1)

Ramsey (F1)

RitaG (F1)

Rocktrap (F1)

RockyHorror (F1)

Rombolo (F1)

Royals2015 (F1)

Ruby (F1)

S2Kari (F1)

S2TSquared (F1)

Saal (F1)

SaltyMike (F1)

Sandalphon (F1)

SassyB (F1)

Scottish (F1)

Seagreen (F1)

SG4 (F1)

Sharpshooter (F1)

Shauna1 (F1)

SherL (F1)

ShiLan (F1)

SimranZ1 (F1)

SiSi (F1)

Sparkdehlily (F1)

Spartacus (F1)

Spikelee (F1)

Spoonbill (F1)

SuperGrey (F1)

SwagPigglett (F1)

Taj (F1)

Taus (F1)

TDanisky (F1)

TonaldTDrump (F1)

TootsiePop (F1)

Tweety (F1)

UncleRicky (F1)

Velveteen (F1)

Wachhund (F1)

Wee (F1)

WheatBerry18 (F1)

Whouxphf (F1)

WillSterrel (F1)

WIVsmall (F1)

XFactor (F1)

Zerg (F1)

Avani (F2)

Che9d (F2)

Demsculpinboyz (F2)

Jabbawokkie (F2)

Yoshi (F2)

Zapner (F2)

Squirty (F3)

TChen (F4)

ThetaBob (F4)

Cornie (F5)

Annotation StatusIn GenBank
Plaque NotesClear circular of diameter 0.5cm at 48hrs. At 72hrs, the clear zone remains as it is but the periphery of the plaque expands to give a turbid appearance, similar to a halo. After 96 hours final plaque size (including the turbid zone) is 5 cm.
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

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SimranZ1_1

SimranZ1_2
(terminase small subunit)

SimranZ1_3
(terminase large subunit)

SimranZ1_4
(portal protein)

SimranZ1_5
(capsid maturation protease)

SimranZ1_6
(scaffolding protein)

SimranZ1_7
(major capsid protein)

SimranZ1_8

SimranZ1_9
(head to tail connector protein)

SimranZ1_10
(head to tail connector protein)

SimranZ1_11
(head to tail connector protein)

SimranZ1_12
(major tail subunit)

SimranZ1_13
(tail assembly chaperone)

SimranZ1_14
(tail assembly chaperone)

SimranZ1_15
(tapemeasure protein)

SimranZ1_16
(minor tail protein)

SimranZ1_17
(minor tail protein)

SimranZ1_18
(minor tail protein)

SimranZ1_19
(minor tail protein)

SimranZ1_20
(D-ala-D-ala carboxypeptidase)

SimranZ1_21
(minor tail protein)

SimranZ1_22
(minor tail protein)

SimranZ1_23

SimranZ1_24
(minor tail protein)

SimranZ1_25
(minor tail protein)

SimranZ1_26

SimranZ1_27

SimranZ1_28

SimranZ1_29

SimranZ1_30

SimranZ1_31

SimranZ1_32

SimranZ1_33
(lysin A)

SimranZ1_34
(lysin B)

SimranZ1_35
(holin)

SimranZ1_36

SimranZ1_37

SimranZ1_38
(DnaQ-like exonuclease)

SimranZ1_39

SimranZ1_40

SimranZ1_41

SimranZ1_42

SimranZ1_43
(putative integrase)

SimranZ1_44

SimranZ1_45
(HTH DNA binding protein)

SimranZ1_46
(HTH DNA binding protein)

SimranZ1_47
(HTH DNA binding protein)

SimranZ1_48

SimranZ1_49

SimranZ1_50
(HTH DNA binding protein)

SimranZ1_51

SimranZ1_52

SimranZ1_53

SimranZ1_54
(RecB-like protein)

SimranZ1_55

SimranZ1_56

SimranZ1_57
(WhiB family transcription factor)

SimranZ1_58

SimranZ1_59
(WhiB)

SimranZ1_60
(putative LuxR protein)

SimranZ1_61

SimranZ1_62

SimranZ1_63

SimranZ1_64

SimranZ1_65
(AAA ATPase)

SimranZ1_66

SimranZ1_67
(DNA methylase)

SimranZ1_68

SimranZ1_69

SimranZ1_70

SimranZ1_71

SimranZ1_72

SimranZ1_73

SimranZ1_74

SimranZ1_75

SimranZ1_76

SimranZ1_77

SimranZ1_78

SimranZ1_79

SimranZ1_80

SimranZ1_81

SimranZ1_82

SimranZ1_83

SimranZ1_84

SimranZ1_85

SimranZ1_86

SimranZ1_87

SimranZ1_88

SimranZ1_89

SimranZ1_90
(HTH DNA binding protein)

SimranZ1_91

SimranZ1_92

SimranZ1_93

SimranZ1_94

SimranZ1_95

SimranZ1_96

SimranZ1_97
(glycosyltransferase)

SimranZ1_98

SimranZ1_99

SimranZ1_100

SimranZ1_101

SimranZ1_102
(serine/threonine kinase)

SimranZ1_103
(glycosyltransferase)

Publication Info
Uploaded to GenBank?Yes
GenBank AccessionKY385384
Refseq NumberNone yet
Archiving Info
Archiving status Not in Pitt Archives
Available Files
Plaque PictureDownload