Mycobacterium phage Spoonbill
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Detailed Information for Phage Spoonbill
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByKevin Ko and Valerie Bostrom
Year Found2010
Location FoundSt. Louis, MO USA
Finding InstitutionWashington University in St. Louis
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS Coordinates38.635526 N, 90.287562 W Map
Discovery NotesTaken from the Flight Cage at the St. Louis Zoo on Sept. 5, 2010
Mixture of soil and "bird poop," bird possibly Roseate Spoonbill (Platalea ajaja)
Surface of damp soil, under a cypress tree, near a pond
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedMar 12, 2012
Genome length (bp)55735
Character of genome ends3' Sticky Overhang
Overhang Length10 bases
Overhang SequenceCGGACGGCGC
GC Content61.3%
Fasta file available?Yes: Download fasta file
Characterization
ClusterF
SubclusterF1
Other Cluster Members

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AbbyNormal (None)

Grib (None)

Kishmeesh (None)

KitCat (None)

MightyMorph (None)

Puck (None)

Renaud18 (None)

WIVsmall1220 (None)

Alexphander (F1)

Anaxagorus (F1)

Ant1Dodson (F1)

ArcusAngelus (F1)

Ardmore (F1)

Arienne (F1)

Asmart (F1)

Awesomesauce (F1)

Barson (F1)

Batiatus (F1)

BigPhil (F1)

Bipolar (F1)

BobaPhett (F1)

Bobi (F1)

Boomer (F1)

Braemar (F1)

Brocalys (F1)

Bubbles123 (F1)

BuzzLyseyear (F1)

Byougenkin (F1)

Cabrinians (F1)

Cakepop (F1)

CaptainTrips (F1)

Cerasum (F1)

Che8 (F1)

Chhibber (F1)

Chikondi (F1)

Chuckly (F1)

Clover (F1)

CoolGuy (F1)

Cornucopia (F1)

Daenerys (F1)

Danda (F1)

Dante (F1)

DaWorst (F1)

DCrust15 (F1)

DeadP (F1)

Desmond (F1)

DillTech15 (F1)

DirtMcgirt (F1)

DLane (F1)

Docouto (F1)

Dorothy (F1)

DotProduct (F1)

Drago (F1)

DRBy19 (F1)

EleanorGeorge (F1)

Emma (F1)

Empress (F1)

Estave1 (F1)

Estella (F1)

Filuzino (F1)

Firehouse51 (F1)

Flathead (F1)

Florinda (F1)

Frankie (F1)

Fruitloop (F1)

FunOne (F1)

Galactic (F1)

Gardregs (F1)

Gendisarray (F1)

Genesis (F1)

Geralt (F1)

Girafales (F1)

Girr (F1)

GUmbie (F1)

Hades (F1)

Hamulus (F1)

Harley (F1)

Hegedechwinu (F1)

Ibhubesi (F1)

Inventum (F1)

IrishSherpFalk (F1)

James (F1)

Job42 (F1)

Judylove (F1)

Kalikimaka (F1)

Kersh (F1)

Kimberlium (F1)

KingMidas (F1)

Kingsley (F1)

Koella (F1)

Krakatau (F1)

KristaRAM (F1)

LillyLatzon (F1)

Llama (F1)

Llij (F1)

Lysinator (F1)

MacDrage (F1)

Mahavrat (F1)

Mantra (F1)

Mattes (F1)

McDiddy (F1)

Melissauren88 (F1)

MilleniumForce (F1)

MinionDave (F1)

Minnie (F1)

Misha28 (F1)

MisterCuddles (F1)

Mozy (F1)

Mutaforma13 (F1)

Nemain (F1)

Nitzel (F1)

Noodle (F1)

OfUltron (F1)

Ogopogo (F1)

OldBen (F1)

OlympiaSaint (F1)

Ovechkin (F1)

OwlsT2W (F1)

Pacc40 (F1)

Peanut21s (F1)

Phabio (F1)

Phasih (F1)

Phatniss (F1)

PhrankthaTank (F1)

Piper2020 (F1)

Pippy (F1)

Plackberry (F1)

Plumbus (F1)

PMC (F1)

Polka14 (F1)

PopTart (F1)

Priscilla (F1)

Prometheus (F1)

Quico (F1)

Ramsey (F1)

RitaG (F1)

Rocktrap (F1)

RockyHorror (F1)

Rombolo (F1)

Royals2015 (F1)

Ruby (F1)

S2Kari (F1)

S2TSquared (F1)

Saal (F1)

SaltyMike (F1)

SassyB (F1)

Scottish (F1)

Seagreen (F1)

SG4 (F1)

Sharpshooter (F1)

Shauna1 (F1)

SherL (F1)

ShiLan (F1)

SimranZ1 (F1)

SiSi (F1)

Sparkdehlily (F1)

Spartacus (F1)

Spikelee (F1)

Spoonbill (F1)

SuperGrey (F1)

SwagPigglett (F1)

Taj (F1)

TDanisky (F1)

TootsiePop (F1)

Tweety (F1)

UncleRicky (F1)

Velveteen (F1)

Wachhund (F1)

Wee (F1)

WheatBerry18 (F1)

Whouxphf (F1)

WillSterrel (F1)

WIVsmall (F1)

XFactor (F1)

Zerg (F1)

Avani (F2)

Che9d (F2)

Demsculpinboyz (F2)

Jabbawokkie (F2)

Yoshi (F2)

Zapner (F2)

Squirty (F3)

TChen (F4)

Cornie (F5)

Plaque NotesSize: ~2 mm
MorphotypeSiphoviridae
Final annotation complete?No
Has been Phamerated?Yes
Gene List

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Spoonbill_1
(terminase small subunit)

Spoonbill_2
(terminase large subunit)

Spoonbill_3
(portal protein)

Spoonbill_4
(capsid maturation protease)

Spoonbill_5
(scaffolding protein)

Spoonbill_6
(major capsid protein)

Spoonbill_7
(head-to-tail connector protein)

Spoonbill_8
(head-to-tail connector protein)

Spoonbill_9
(head-to-tail connector protein)

Spoonbill_10
(head-to-tail connector protein)

Spoonbill_11
(major tail protein)

Spoonbill_12
(tail assembly chaperone)

Spoonbill_13
(tail assembly chaperone)

Spoonbill_14
(tape measure protein)

Spoonbill_15
(minor tail protein)

Spoonbill_16
(minor tail protein)

Spoonbill_17
(minor tail protein)

Spoonbill_18
(minor tail protein)

Spoonbill_19
(minor tail protein)

Spoonbill_20
(minor tail protein)

Spoonbill_21
(minor tail protein)

Spoonbill_22

Spoonbill_23
(minor tail protein)

Spoonbill_24
(minor tail protein)

Spoonbill_25
(helix-turn-helix DNA binding domain protein)

Spoonbill_26

Spoonbill_27

Spoonbill_28

Spoonbill_29

Spoonbill_30
(lysin A)

Spoonbill_31
(lysin B)

Spoonbill_32
(holin)

Spoonbill_33

Spoonbill_34

Spoonbill_35
(DNA polymerase III subunit)

Spoonbill_36

Spoonbill_37

Spoonbill_38

Spoonbill_39

Spoonbill_40
(excise)

Spoonbill_41

Spoonbill_42
(integrase)

Spoonbill_43

Spoonbill_44

Spoonbill_45

Spoonbill_46
(helix-turn-helix DNA binding domain protein)

Spoonbill_47

Spoonbill_48

Spoonbill_49

Spoonbill_50

Spoonbill_51

Spoonbill_52

Spoonbill_53

Spoonbill_54
(WhiB family transcription factor)

Spoonbill_55

Spoonbill_56

Spoonbill_57
(helix-turn-helix DNA binding domain protein)

Spoonbill_58

Spoonbill_59

Spoonbill_60

Spoonbill_61
(DNA recombinase)

Spoonbill_62

Spoonbill_63
(HNH endonuclease)

Spoonbill_65
(DNA methylase)

Spoonbill_66

Spoonbill_67
(DNA methylase)

Spoonbill_68

Spoonbill_69

Spoonbill_70

Spoonbill_71
(GIY-YIG endonuclease)

Spoonbill_72

Spoonbill_73

Spoonbill_74

Spoonbill_75

Spoonbill_76

Spoonbill_77

Spoonbill_78

Spoonbill_79
(MPME 1 protein)

Spoonbill_80

Spoonbill_81

Spoonbill_82

Spoonbill_83

Spoonbill_84

Spoonbill_85

Spoonbill_86

Spoonbill_87

Spoonbill_88

Spoonbill_89

Spoonbill_90

Spoonbill_91
(GIY-YIG endonuclease)

Spoonbill_92

Spoonbill_93

Spoonbill_94

Spoonbill_95

Spoonbill_96

Spoonbill_97

Spoonbill_98

Spoonbill_99

Spoonbill_100

Spoonbill_101
(glycosyltransferase)

Spoonbill_102

Spoonbill_103
(glycosyltransferase)

Spoonbill_104
(HNH endonuclease)

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMF190168
Refseq NumberNone yet
Published in PaperPope, Bowman, Russell, et al 2015, eLIFE
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload