Mycobacterium phage Pippy
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Detailed Information for Phage Pippy
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByVictoria Wolf and Rebecka Worrell
Year Found2012
Location FoundNorthampton, MA USA
Finding InstitutionSmith College
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Unknown
Isolation TemperatureNot entered
GPS CoordinatesUnavailable
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJun 26, 2013
Sequencing FacilitySmith College
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage494
Sanger Finishing Reactions2
Genome length (bp)56663
Character of genome ends3' Sticky Overhang
Overhang Length10 bases
Overhang SequenceCGGAAGGCGC
GC Content61.5%
Fasta file available?Yes: Download fasta file
Characterization
ClusterF
SubclusterF1
Other Cluster Members

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AbbyNormal (None)

Grib (None)

Kishmeesh (None)

KitCat (None)

MightyMorph (None)

Puck (None)

Renaud18 (None)

WIVsmall1220 (None)

Alexphander (F1)

Anaxagorus (F1)

Ant1Dodson (F1)

ArcusAngelus (F1)

Ardmore (F1)

Arienne (F1)

Asmart (F1)

Awesomesauce (F1)

Barson (F1)

Batiatus (F1)

BigPhil (F1)

Bipolar (F1)

BobaPhett (F1)

Bobi (F1)

Boomer (F1)

Braemar (F1)

Brocalys (F1)

Bubbles123 (F1)

BuzzLyseyear (F1)

Byougenkin (F1)

Cabrinians (F1)

Cakepop (F1)

CaptainTrips (F1)

Cerasum (F1)

Che8 (F1)

Chhibber (F1)

Chikondi (F1)

Chuckly (F1)

Clover (F1)

CoolGuy (F1)

Cornucopia (F1)

Daenerys (F1)

Danda (F1)

Dante (F1)

DaWorst (F1)

DCrust15 (F1)

DeadP (F1)

Desmond (F1)

DillTech15 (F1)

DirtMcgirt (F1)

DLane (F1)

Docouto (F1)

Dorothy (F1)

DotProduct (F1)

Drago (F1)

DRBy19 (F1)

EleanorGeorge (F1)

Emma (F1)

Empress (F1)

Estave1 (F1)

Estella (F1)

Filuzino (F1)

Firehouse51 (F1)

Flathead (F1)

Florinda (F1)

Frankie (F1)

Fruitloop (F1)

FunOne (F1)

Galactic (F1)

Gardregs (F1)

Gendisarray (F1)

Genesis (F1)

Geralt (F1)

Girafales (F1)

Girr (F1)

GUmbie (F1)

Hades (F1)

Hamulus (F1)

Harley (F1)

Hegedechwinu (F1)

Ibhubesi (F1)

Inventum (F1)

IrishSherpFalk (F1)

James (F1)

Job42 (F1)

Judylove (F1)

Kalikimaka (F1)

Kersh (F1)

Kimberlium (F1)

KingMidas (F1)

Kingsley (F1)

Koella (F1)

Krakatau (F1)

KristaRAM (F1)

LillyLatzon (F1)

Llama (F1)

Llij (F1)

Lysinator (F1)

MacDrage (F1)

Mahavrat (F1)

Mantra (F1)

Mattes (F1)

McDiddy (F1)

Melissauren88 (F1)

MilleniumForce (F1)

MinionDave (F1)

Minnie (F1)

Misha28 (F1)

MisterCuddles (F1)

Mozy (F1)

Mutaforma13 (F1)

Nemain (F1)

Nitzel (F1)

Noodle (F1)

OfUltron (F1)

Ogopogo (F1)

OldBen (F1)

OlympiaSaint (F1)

Ovechkin (F1)

OwlsT2W (F1)

Pacc40 (F1)

Peanut21s (F1)

Phabio (F1)

Phasih (F1)

Phatniss (F1)

PhrankthaTank (F1)

Piper2020 (F1)

Pippy (F1)

Plackberry (F1)

Plumbus (F1)

PMC (F1)

Polka14 (F1)

PopTart (F1)

Priscilla (F1)

Prometheus (F1)

Quico (F1)

Ramsey (F1)

RitaG (F1)

Rocktrap (F1)

RockyHorror (F1)

Rombolo (F1)

Royals2015 (F1)

Ruby (F1)

S2Kari (F1)

S2TSquared (F1)

Saal (F1)

SaltyMike (F1)

SassyB (F1)

Scottish (F1)

Seagreen (F1)

SG4 (F1)

Sharpshooter (F1)

Shauna1 (F1)

SherL (F1)

ShiLan (F1)

SimranZ1 (F1)

SiSi (F1)

Sparkdehlily (F1)

Spartacus (F1)

Spikelee (F1)

Spoonbill (F1)

SuperGrey (F1)

SwagPigglett (F1)

Taj (F1)

TDanisky (F1)

TootsiePop (F1)

Tweety (F1)

UncleRicky (F1)

Velveteen (F1)

Wachhund (F1)

Wee (F1)

WheatBerry18 (F1)

Whouxphf (F1)

WillSterrel (F1)

WIVsmall (F1)

XFactor (F1)

Zerg (F1)

Avani (F2)

Che9d (F2)

Demsculpinboyz (F2)

Jabbawokkie (F2)

Yoshi (F2)

Zapner (F2)

Squirty (F3)

TChen (F4)

Cornie (F5)

MorphotypeSiphoviridae
Final annotation complete?No
Has been Phamerated?Yes
Gene List

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Pippy_1
(terminase small subunit)

Pippy_2
(terminase large subunit)

Pippy_3
(portal protein)

Pippy_4
(capsid maturation protease)

Pippy_5
(scaffolding protein)

Pippy_6
(major capsid protein)

Pippy_7
(head-to-tail connector protein)

Pippy_8
(head-to-tail connector protein)

Pippy_9
(head-to-tail connector protein)

Pippy_10
(head-to-tail connector protein)

Pippy_11
(major tail protein)

Pippy_12
(tail assembly chaperone)

Pippy_13
(tail assembly chaperone)

Pippy_14
(tape measure protein)

Pippy_15
(minor tail protein)

Pippy_16
(minor tail protein)

Pippy_17
(minor tail protein)

Pippy_18
(minor tail protein)

Pippy_19
(minor tail protein)

Pippy_20

Pippy_21

Pippy_22

Pippy_23

Pippy_24
(lysin A)

Pippy_25
(lysin B)

Pippy_26
(holin)

Pippy_27

Pippy_28

Pippy_29
(DNA polymerase III subunit)

Pippy_30

Pippy_31

Pippy_32

Pippy_33

Pippy_34

Pippy_35

Pippy_36
(transposase)

Pippy_37

Pippy_38
(integrase)

Pippy_39
(ReIB-like toxin)

Pippy_40
(ReIE-like antitoxin)

Pippy_41

Pippy_42
(peptidase)

Pippy_43
(immunity repressor)

Pippy_44

Pippy_45
(antirepressor)

Pippy_46

Pippy_47

Pippy_48

Pippy_49

Pippy_50

Pippy_51

Pippy_52

Pippy_53

Pippy_54

Pippy_55
(WhiB family transcription factor)

Pippy_56

Pippy_57
(WhiB family transcription factor)

Pippy_58
(HTH DNA binding protein)

Pippy_59

Pippy_60

Pippy_61

Pippy_62
(HNH endonuclease)

Pippy_63
(DNA recombinase)

Pippy_64
(HNH endonuclease)

Pippy_65
(helicase)

Pippy_66

Pippy_67

Pippy_68

Pippy_69

Pippy_70
(G-I-Y-Y-I-G endonuclease)

Pippy_71

Pippy_72

Pippy_73

Pippy_74

Pippy_75

Pippy_76

Pippy_77

Pippy_78

Pippy_79

Pippy_80

Pippy_81

Pippy_82

Pippy_83

Pippy_84

Pippy_85

Pippy_86

Pippy_87

Pippy_88

Pippy_89
(G-I-Y-Y-I-G endonuclease)

Pippy_90

Pippy_91

Pippy_92

Pippy_93

Pippy_94

Pippy_95

Pippy_96

Pippy_97

Pippy_98

Pippy_99

Pippy_100
(glycosyltransferase)

Pippy_101
(serine/threonine kinase)

Pippy_102
(glycosyltransferase)

Pippy_103
(HNH endonuclease)

Publication Info
Uploaded to GenBank?Yes
GenBank AccessionKY965064
Refseq NumberNone yet
Published in PaperPope, Bowman, Russell, et al 2015, eLIFE
Available Files
Plaque PictureDownload
GenBank File for PhameratorDownload