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Mycobacterium phage Kimberlium
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Detailed Information for Phage Kimberlium
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByAmanda Richman
Year Found2014
Location FoundGettysburg, PA United States
Finding InstitutionGettysburg College
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS CoordinatesUnavailable
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedFeb 16, 2015
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage1329
Genome length (bp)56826
Character of genome ends3' Sticky Overhang
Overhang Length10 bases
Overhang SequenceCCGATGGCAT
GC Content61.4%
Fasta file available?Yes: Download fasta file
Characterization
ClusterF
SubclusterF1
Other Cluster Members

Click to View

AbbyNormal (None)

Grib (None)

Kishmeesh (None)

KitCat (None)

MightyMorph (None)

Puck (None)

WIVsmall1220 (None)

Alexphander (F1)

Anaxagorus (F1)

Ant1Dodson (F1)

ArcusAngelus (F1)

Ardmore (F1)

Arienne (F1)

Asmart (F1)

Awesomesauce (F1)

Barson (F1)

Batiatus (F1)

BigPhil (F1)

Bipolar (F1)

BobaPhett (F1)

Bobi (F1)

Boomer (F1)

Braemar (F1)

Brocalys (F1)

Bubbles123 (F1)

BuzzLyseyear (F1)

Byougenkin (F1)

Cabrinians (F1)

Cakepop (F1)

CaptainTrips (F1)

Cerasum (F1)

Che8 (F1)

Chhibber (F1)

Chikondi (F1)

Chuckly (F1)

Clover (F1)

CoolGuy (F1)

Cornucopia (F1)

Daenerys (F1)

Danda (F1)

Dante (F1)

DaWorst (F1)

DCrust15 (F1)

DeadP (F1)

Desmond (F1)

DillTech15 (F1)

DirtMcgirt (F1)

DLane (F1)

Docouto (F1)

Dorothy (F1)

DotProduct (F1)

Drago (F1)

DRBy19 (F1)

Emma (F1)

Empress (F1)

Estave1 (F1)

Estella (F1)

Filuzino (F1)

Firehouse51 (F1)

Flathead (F1)

Florinda (F1)

Frankie (F1)

Fruitloop (F1)

FunOne (F1)

Galactic (F1)

Gardregs (F1)

Gendisarray (F1)

Genesis (F1)

Geralt (F1)

Girafales (F1)

Girr (F1)

GUmbie (F1)

Hades (F1)

Hamulus (F1)

Harley (F1)

Hegedechwinu (F1)

Ibhubesi (F1)

Inventum (F1)

IrishSherpFalk (F1)

James (F1)

Job42 (F1)

Judylove (F1)

Kalikimaka (F1)

Kersh (F1)

Kimberlium (F1)

KingMidas (F1)

Kingsley (F1)

Koella (F1)

Krakatau (F1)

KristaRAM (F1)

LillyLatzon (F1)

Llama (F1)

Llij (F1)

Lysinator (F1)

MacDrage (F1)

Mahavrat (F1)

Mantra (F1)

Mattes (F1)

McDiddy (F1)

Melissauren88 (F1)

MilleniumForce (F1)

MinionDave (F1)

Minnie (F1)

Misha28 (F1)

MisterCuddles (F1)

Mozy (F1)

Mutaforma13 (F1)

Nemain (F1)

Nitzel (F1)

Noodle (F1)

OfUltron (F1)

Ogopogo (F1)

OldBen (F1)

OlympiaSaint (F1)

Ovechkin (F1)

OwlsT2W (F1)

Pacc40 (F1)

Peanut21s (F1)

Phabio (F1)

Phasih (F1)

Phatniss (F1)

PhrankthaTank (F1)

Piper2020 (F1)

Pippy (F1)

Plackberry (F1)

Plumbus (F1)

PMC (F1)

Polka14 (F1)

PopTart (F1)

Priscilla (F1)

Prometheus (F1)

Quico (F1)

Ramsey (F1)

RitaG (F1)

Rocktrap (F1)

RockyHorror (F1)

Rombolo (F1)

Royals2015 (F1)

Ruby (F1)

S2Kari (F1)

S2TSquared (F1)

Saal (F1)

SaltyMike (F1)

SassyB (F1)

Scottish (F1)

Seagreen (F1)

SG4 (F1)

Sharpshooter (F1)

Shauna1 (F1)

SherL (F1)

ShiLan (F1)

SimranZ1 (F1)

SiSi (F1)

Sparkdehlily (F1)

Spartacus (F1)

Spoonbill (F1)

SuperGrey (F1)

SwagPigglett (F1)

Taj (F1)

TDanisky (F1)

TootsiePop (F1)

Tweety (F1)

UncleRicky (F1)

Velveteen (F1)

Wachhund (F1)

Wee (F1)

WheatBerry18 (F1)

Whouxphf (F1)

WillSterrel (F1)

WIVsmall (F1)

XFactor (F1)

Zerg (F1)

Avani (F2)

Che9d (F2)

Demsculpinboyz (F2)

Jabbawokkie (F2)

Yoshi (F2)

Zapner (F2)

Squirty (F3)

TChen (F4)

Cornie (F5)

MorphotypeSiphoviridae
Final annotation complete?Yes
Number of Genes105
Has been Phamerated?Yes
Gene List

Click to View

Kimberlium_1
(HNH endonuclease)

Kimberlium_2
(Small terminase subunit)

Kimberlium_3
(Large terminase subunit)

Kimberlium_4
(Portal)

Kimberlium_5
(Capsid maturation protease)

Kimberlium_6
(Scaffolding)

Kimberlium_7
(Major capsid)

Kimberlium_8
(Head-to-tail connector)

Kimberlium_9
(Head-to-tail connector)

Kimberlium_10
(Head-to-tail connector)

Kimberlium_11
(Head-to-tail connector)

Kimberlium_12
(Major tail subunit)

Kimberlium_13
(Tail assembly chaperone)

Kimberlium_14
(Tail assembly chaperone)

Kimberlium_15
(Tapemeasure)

Kimberlium_16
(Transposase)

Kimberlium_17
(Minor tail)

Kimberlium_18
(Minor tail)

Kimberlium_19
(Minor tail)

Kimberlium_20
(Minor tail)

Kimberlium_21
(D-alanyl D-alanine carboxypeptidase)

Kimberlium_22
(Minor tail)

Kimberlium_23

Kimberlium_24

Kimberlium_25

Kimberlium_26
(Minor tail)

Kimberlium_27
(HTH DNA binding)

Kimberlium_28

Kimberlium_29

Kimberlium_30

Kimberlium_31

Kimberlium_32
(Lysin A)

Kimberlium_33
(Lysin B)

Kimberlium_34
(Holin)

Kimberlium_35

Kimberlium_36

Kimberlium_37
(Dna-Q like exonuclease)

Kimberlium_38

Kimberlium_39

Kimberlium_40

Kimberlium_41

Kimberlium_42

Kimberlium_43

Kimberlium_44
(Integrase, tyr)

Kimberlium_45

Kimberlium_46
(HTH DNA binding)

Kimberlium_47
(CRO)

Kimberlium_48
(Antirepressor)

Kimberlium_49

Kimberlium_50

Kimberlium_51

Kimberlium_52

Kimberlium_53
(Xis)

Kimberlium_54

Kimberlium_55

Kimberlium_56

Kimberlium_57

Kimberlium_58

Kimberlium_59
(WhiB)

Kimberlium_60
(Helix-turn-helix DNA binding)

Kimberlium_61
(Helix-turn-helix DNA binding)

Kimberlium_62
(WhiB)

Kimberlium_63
(Helix-turn-helix DNA binding)

Kimberlium_64

Kimberlium_65

Kimberlium_66

Kimberlium_67

Kimberlium_68

Kimberlium_69

Kimberlium_70
(HNH endonuclease)

Kimberlium_71

Kimberlium_72

Kimberlium_73
(GIY-YIG endonuclease)

Kimberlium_74

Kimberlium_75

Kimberlium_76

Kimberlium_77

Kimberlium_78

Kimberlium_79

Kimberlium_80

Kimberlium_81

Kimberlium_82

Kimberlium_83

Kimberlium_84

Kimberlium_85

Kimberlium_86

Kimberlium_87

Kimberlium_88

Kimberlium_89

Kimberlium_90

Kimberlium_91

Kimberlium_92

Kimberlium_93

Kimberlium_94

Kimberlium_95

Kimberlium_96
(AlpA-like)

Kimberlium_97

Kimberlium_98

Kimberlium_99

Kimberlium_100

Kimberlium_101

Kimberlium_102
(Glycosyltransferase)

Kimberlium_103
(Ser/Thr kinase)

Kimberlium_104

Kimberlium_105
(Glycosyltransferase)

Submitted Annotation in DNA Master FormatDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionKR935214
Refseq NumberNone yet