Mycobacterium phage RitaG
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Detailed Information for Phage RitaG
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByKevin A. Brighter Jr.
Year Found2015
Location FoundBensalem, PA USA
Finding InstitutionLa Salle University
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS CoordinatesUnavailable
Discovery NotesFound in dark soil and had a mixture of mulch and flowers planted around it. Retrieved at a depth of 1/2 inch in to soil on a 90 degree Fahrenheit day.
Naming NotesDiscovered in my grandmother's garden and her name is Rita.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 13, 2016
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage1074
Genome length (bp)57789
Character of genome ends3' Sticky Overhang
Overhang Length10 bases
Overhang SequenceCGGACGGCGC
GC Content61.6%
Sequencing NotesThere was one deletion present in 15% of this phage population. Deletion 1 was 5053 bp long, and is between positions 42000 - 47052, inclusive.
Fasta file available?Yes: Download fasta file
Characterization
ClusterF
SubclusterF1
Other Cluster Members

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AbbyNormal (None)

Grib (None)

Kishmeesh (None)

KitCat (None)

MightyMorph (None)

Puck (None)

Renaud18 (None)

WIVsmall1220 (None)

Alexphander (F1)

Anaxagorus (F1)

Ant1Dodson (F1)

ArcusAngelus (F1)

Ardmore (F1)

Arienne (F1)

Asmart (F1)

Awesomesauce (F1)

Barson (F1)

Batiatus (F1)

BigPhil (F1)

Bipolar (F1)

BobaPhett (F1)

Bobi (F1)

Boomer (F1)

Braemar (F1)

Brocalys (F1)

Bubbles123 (F1)

BuzzLyseyear (F1)

Byougenkin (F1)

Cabrinians (F1)

Cakepop (F1)

CaptainTrips (F1)

Cerasum (F1)

Che8 (F1)

Chhibber (F1)

Chikondi (F1)

Chuckly (F1)

Clover (F1)

CoolGuy (F1)

Cornucopia (F1)

Daenerys (F1)

Danda (F1)

Dante (F1)

DaWorst (F1)

DCrust15 (F1)

DeadP (F1)

Desmond (F1)

DillTech15 (F1)

DirtMcgirt (F1)

DLane (F1)

Docouto (F1)

Dorothy (F1)

DotProduct (F1)

Drago (F1)

DRBy19 (F1)

EleanorGeorge (F1)

Emma (F1)

Empress (F1)

Estave1 (F1)

Estella (F1)

Filuzino (F1)

Firehouse51 (F1)

Flathead (F1)

Florinda (F1)

Frankie (F1)

Fruitloop (F1)

FunOne (F1)

Galactic (F1)

Gardregs (F1)

Gendisarray (F1)

Genesis (F1)

Geralt (F1)

Girafales (F1)

Girr (F1)

GUmbie (F1)

Hades (F1)

Hamulus (F1)

Harley (F1)

Hegedechwinu (F1)

Ibhubesi (F1)

Inventum (F1)

IrishSherpFalk (F1)

James (F1)

Job42 (F1)

Judylove (F1)

Kalikimaka (F1)

Kersh (F1)

Kimberlium (F1)

KingMidas (F1)

Kingsley (F1)

Koella (F1)

Krakatau (F1)

KristaRAM (F1)

LillyLatzon (F1)

Llama (F1)

Llij (F1)

Lysinator (F1)

MacDrage (F1)

Mahavrat (F1)

Mantra (F1)

Mattes (F1)

McDiddy (F1)

Melissauren88 (F1)

MilleniumForce (F1)

MinionDave (F1)

Minnie (F1)

Misha28 (F1)

MisterCuddles (F1)

Mozy (F1)

Mutaforma13 (F1)

Nemain (F1)

Nitzel (F1)

Noodle (F1)

OfUltron (F1)

Ogopogo (F1)

OldBen (F1)

OlympiaSaint (F1)

Ovechkin (F1)

OwlsT2W (F1)

Pacc40 (F1)

Peanut21s (F1)

Phabio (F1)

Phasih (F1)

Phatniss (F1)

PhrankthaTank (F1)

Piper2020 (F1)

Pippy (F1)

Plackberry (F1)

Plumbus (F1)

PMC (F1)

Polka14 (F1)

PopTart (F1)

Priscilla (F1)

Prometheus (F1)

Quico (F1)

Ramsey (F1)

RitaG (F1)

Rocktrap (F1)

RockyHorror (F1)

Rombolo (F1)

Royals2015 (F1)

Ruby (F1)

S2Kari (F1)

S2TSquared (F1)

Saal (F1)

SaltyMike (F1)

SassyB (F1)

Scottish (F1)

Seagreen (F1)

SG4 (F1)

Sharpshooter (F1)

Shauna1 (F1)

SherL (F1)

ShiLan (F1)

SimranZ1 (F1)

SiSi (F1)

Sparkdehlily (F1)

Spartacus (F1)

Spikelee (F1)

Spoonbill (F1)

SuperGrey (F1)

SwagPigglett (F1)

Taj (F1)

TDanisky (F1)

TootsiePop (F1)

Tweety (F1)

UncleRicky (F1)

Velveteen (F1)

Wachhund (F1)

Wee (F1)

WheatBerry18 (F1)

Whouxphf (F1)

WillSterrel (F1)

WIVsmall (F1)

XFactor (F1)

Zerg (F1)

Avani (F2)

Che9d (F2)

Demsculpinboyz (F2)

Jabbawokkie (F2)

Yoshi (F2)

Zapner (F2)

Squirty (F3)

TChen (F4)

Cornie (F5)

Plaque NotesIs in Lysogenic cycle. Plaque has a ring around it which makes it seem bigger. the inner part of the the plaque is very clear, while the otter part, or the ring is a little bit cloudy. The full diameter of the the plaque is 1 cm. The diameter of the center section is approximately .6 cm.
MorphotypeSiphoviridae
Final annotation complete?No
Has been Phamerated?Yes
Gene List

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RitaG_1
(terminase small subunit)

RitaG_2
(terminase large subunit)

RitaG_3
(portal protein)

RitaG_4
(capsid maturation protease)

RitaG_5
(scaffolding protein)

RitaG_6
(major capsid protein)

RitaG_7
(head-to-tail connector protein)

RitaG_8
(head-to-tail connector protein)

RitaG_9
(head-to-tail connector protein)

RitaG_10
(head-to-tail connector protein)

RitaG_11
(major tail subunit)

RitaG_12
(tail assembly chaperone)

RitaG_13
(tail assembly chaperone)

RitaG_14
(tape measure protein)

RitaG_15
(minor tail protein)

RitaG_16
(minor tail protein)

RitaG_17
(minor tail protein)

RitaG_18
(minor tail protein)

RitaG_19
(minor tail protein)

RitaG_20
(minor tail protein)

RitaG_21
(minor tail protein)

RitaG_22
(minor tail protein)

RitaG_23
(minor tail protein)

RitaG_24
(minor tail protein)

RitaG_25
(HTH DNA-binding domain protein)

RitaG_26

RitaG_27

RitaG_28

RitaG_29

RitaG_30

RitaG_31
(lysin A)

RitaG_32
(lysin B)

RitaG_33
(holin)

RitaG_34

RitaG_35

RitaG_36
(DnaQ-like exonuclease)

RitaG_37

RitaG_38

RitaG_39

RitaG_40

RitaG_41
(integrase)

RitaG_42

RitaG_43
(immunity repressor)

RitaG_44
(CRO protein)

RitaG_45

RitaG_46

RitaG_47

RitaG_48

RitaG_49

RitaG_50

RitaG_51

RitaG_52
(WhiB family transcription factor)

RitaG_53

RitaG_54
(WhiB family transcription factor)

RitaG_55
(helix-turn-helix DNA binding domain protein)

RitaG_56

RitaG_57

RitaG_58

RitaG_59
(DNA recombinase)

RitaG_60

RitaG_61
(HNH endonuclease)

RitaG_62
(DNA methylase)

RitaG_63

RitaG_64
(DNA methylase)

RitaG_65

RitaG_66

RitaG_67

RitaG_68

RitaG_69

RitaG_70

RitaG_71
(DNA methylase)

RitaG_72

RitaG_73

RitaG_74
(DNA methylase)

RitaG_75

RitaG_76

RitaG_77

RitaG_78

RitaG_79

RitaG_80

RitaG_81

RitaG_82

RitaG_83

RitaG_84

RitaG_85

RitaG_86

RitaG_87

RitaG_88

RitaG_89

RitaG_90

RitaG_91

RitaG_92

RitaG_93
(MerR-like HTH DNA binding domain protein)

RitaG_94

RitaG_95

RitaG_96

RitaG_97

RitaG_98

RitaG_99

RitaG_100
(galactosyltransferase)

RitaG_101

RitaG_102
(glycosyltransferase)

RitaG_103
(HNH endonuclease)

Submitted Annotation in DNA Master FormatDownload
Submitted Minimal DNA Master FileDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMF668281
Refseq NumberNone yet
Available Files
Final DNAMaster FileDownload
GenBank File for PhameratorDownload