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Mycobacterium phage GUmbie
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Detailed Information for Phage GUmbie
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByTara Togstad
Year Found2010
Location FoundSpokane, WA USA
Finding InstitutionGonzaga University
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS Coordinates47.6679 N, 117.4005 W Map
Discovery NotesDate: 9-3-10
Time: 3:40pm
Location: Gonzaga University campus, near landscaping, flowers, lots of foot traffic
Depth: 4cm
Very moist soil
Temp: 84°F
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 26, 2011
Genome length (bp)57387
Character of genome ends3' Sticky Overhang
Overhang Length10 bases
Overhang SequenceCGGAAGGCGC
GC Content61.4%
Fasta file available?Yes: Download fasta file
Characterization
ClusterF
SubclusterF1
Other Cluster Members

Click to View

AbbyNormal (None)

Grib (None)

Kishmeesh (None)

KitCat (None)

MightyMorph (None)

Puck (None)

Renaud18 (None)

WIVsmall1220 (None)

Alexphander (F1)

Anaxagorus (F1)

Ant1Dodson (F1)

ArcusAngelus (F1)

Ardmore (F1)

Arienne (F1)

Asmart (F1)

Awesomesauce (F1)

Barson (F1)

Batiatus (F1)

BigPhil (F1)

Bipolar (F1)

BobaPhett (F1)

Bobi (F1)

Boomer (F1)

Braemar (F1)

Brocalys (F1)

Bubbles123 (F1)

BuzzLyseyear (F1)

Byougenkin (F1)

Cabrinians (F1)

Cakepop (F1)

CaptainTrips (F1)

Cerasum (F1)

Che8 (F1)

Chhibber (F1)

Chikondi (F1)

Chuckly (F1)

Clover (F1)

CoolGuy (F1)

Cornucopia (F1)

Daenerys (F1)

Danda (F1)

Dante (F1)

DaWorst (F1)

DCrust15 (F1)

DeadP (F1)

Desmond (F1)

DillTech15 (F1)

DirtMcgirt (F1)

DLane (F1)

Docouto (F1)

Dorothy (F1)

DotProduct (F1)

Drago (F1)

DRBy19 (F1)

Emma (F1)

Empress (F1)

Estave1 (F1)

Estella (F1)

Filuzino (F1)

Firehouse51 (F1)

Flathead (F1)

Florinda (F1)

Frankie (F1)

Fruitloop (F1)

FunOne (F1)

Galactic (F1)

Gardregs (F1)

Gendisarray (F1)

Genesis (F1)

Geralt (F1)

Girafales (F1)

Girr (F1)

GUmbie (F1)

Hades (F1)

Hamulus (F1)

Harley (F1)

Hegedechwinu (F1)

Ibhubesi (F1)

Inventum (F1)

IrishSherpFalk (F1)

James (F1)

Job42 (F1)

Judylove (F1)

Kalikimaka (F1)

Kersh (F1)

Kimberlium (F1)

KingMidas (F1)

Kingsley (F1)

Koella (F1)

Krakatau (F1)

KristaRAM (F1)

LillyLatzon (F1)

Llama (F1)

Llij (F1)

Lysinator (F1)

MacDrage (F1)

Mahavrat (F1)

Mantra (F1)

Mattes (F1)

McDiddy (F1)

Melissauren88 (F1)

MilleniumForce (F1)

MinionDave (F1)

Minnie (F1)

Misha28 (F1)

MisterCuddles (F1)

Mozy (F1)

Mutaforma13 (F1)

Nemain (F1)

Nitzel (F1)

Noodle (F1)

OfUltron (F1)

Ogopogo (F1)

OldBen (F1)

OlympiaSaint (F1)

Ovechkin (F1)

OwlsT2W (F1)

Pacc40 (F1)

Peanut21s (F1)

Phabio (F1)

Phasih (F1)

Phatniss (F1)

PhrankthaTank (F1)

Piper2020 (F1)

Pippy (F1)

Plackberry (F1)

Plumbus (F1)

PMC (F1)

Polka14 (F1)

PopTart (F1)

Priscilla (F1)

Prometheus (F1)

Quico (F1)

Ramsey (F1)

RitaG (F1)

Rocktrap (F1)

RockyHorror (F1)

Rombolo (F1)

Royals2015 (F1)

Ruby (F1)

S2Kari (F1)

S2TSquared (F1)

Saal (F1)

SaltyMike (F1)

SassyB (F1)

Scottish (F1)

Seagreen (F1)

SG4 (F1)

Sharpshooter (F1)

Shauna1 (F1)

SherL (F1)

ShiLan (F1)

SimranZ1 (F1)

SiSi (F1)

Sparkdehlily (F1)

Spartacus (F1)

Spoonbill (F1)

SuperGrey (F1)

SwagPigglett (F1)

Taj (F1)

TDanisky (F1)

TootsiePop (F1)

Tweety (F1)

UncleRicky (F1)

Velveteen (F1)

Wachhund (F1)

Wee (F1)

WheatBerry18 (F1)

Whouxphf (F1)

WillSterrel (F1)

WIVsmall (F1)

XFactor (F1)

Zerg (F1)

Avani (F2)

Che9d (F2)

Demsculpinboyz (F2)

Jabbawokkie (F2)

Yoshi (F2)

Zapner (F2)

Squirty (F3)

TChen (F4)

Cornie (F5)

Plaque NotesLarge clear plaques
MorphotypeSiphoviridae
Final annotation complete?Yes
Number of Genes103
Has been Phamerated?Yes
Gene List

Click to View

GUmbie_1
(Terminase, small subunit)

GUmbie_2
(Terminase, large subunit)

GUmbie_3
(portal)

GUmbie_4
(capsid maturation protease.)

GUmbie_5
(scaffolding)

GUmbie_6
(major capsid)

GUmbie_7

GUmbie_8

GUmbie_9

GUmbie_10

GUmbie_11
(major tail subunit)

GUmbie_12
(tail assembly chaperone)

GUmbie_13
(tail assembly chaperone)

GUmbie_14
(tapemeasure)

GUmbie_15
(minor tail subunit)

GUmbie_16
(minor tail subunit)

GUmbie_17
(minor tail subunit)

GUmbie_18
(minor tail subunit)

GUmbie_19
(D-ala-D-ala carboxypeptidase)

GUmbie_20

GUmbie_21

GUmbie_22

GUmbie_23

GUmbie_24

GUmbie_25

GUmbie_26

GUmbie_27

GUmbie_28

GUmbie_29

GUmbie_30
(Lysin A)

GUmbie_31
(LysB)

GUmbie_32
(Holin)

GUmbie_33

GUmbie_34

GUmbie_35
(DnaQ-like)

GUmbie_36

GUmbie_37

GUmbie_38
(PLA2 like domain.)

GUmbie_39

GUmbie_40
(HTH DNA binding)

GUmbie_41
(Integrase (Y-int))

GUmbie_42

GUmbie_43

GUmbie_44
(HTH DNA binding)

GUmbie_45
(Antirepressor)

GUmbie_46

GUmbie_47

GUmbie_48

GUmbie_49

GUmbie_50

GUmbie_51

GUmbie_52

GUmbie_53

GUmbie_54

GUmbie_55
(WhiB)

GUmbie_56

GUmbie_57
(WhiB)

GUmbie_58

GUmbie_59

GUmbie_60

GUmbie_61

GUmbie_62
(AAA ATPase.)

GUmbie_63
(HNH endonuclease domain)

GUmbie_64
(DNA methylase)

GUmbie_65

GUmbie_66

GUmbie_67

GUmbie_68
(GIY-YIG domain)

GUmbie_69

GUmbie_70

GUmbie_71

GUmbie_72

GUmbie_73

GUmbie_74
(MPME2)

GUmbie_75

GUmbie_76

GUmbie_77

GUmbie_78

GUmbie_79

GUmbie_80

GUmbie_81

GUmbie_82

GUmbie_83

GUmbie_84

GUmbie_85

GUmbie_86

GUmbie_87

GUmbie_88

GUmbie_89

GUmbie_90

GUmbie_91

GUmbie_92

GUmbie_93
(MerR-like.)

GUmbie_94

GUmbie_95

GUmbie_96
(AlpA?)

GUmbie_97

GUmbie_98

GUmbie_99

GUmbie_100
(N-acetylgalactosaminyl transferase)

GUmbie_101
(Ser/Thr kinase domain.)

GUmbie_102

GUmbie_103
(N-acetylglucosaminyl transferase)

GUmbie_104
(HNH endonuclease domain)

Publication Info
Uploaded to GenBank?Yes
GenBank AccessionJN398368
Refseq NumberNC_023746
Published in PaperPope, Bowman, Russell, et al 2015, eLIFE
Available Files
Plaque PictureDownload
EM PictureDownload
Final DNAMaster FileDownload