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Mycobacterium phage Bubbles123
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Detailed Information for Phage Bubbles123
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found BySarah Torres and Paul Merlau
Year Found2012
Location FoundGrand Prairie, TX United States of America
Finding InstitutionUniversity of North Texas
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS Coordinates32.588889 N, 97.041944 W Map
Naming NotesThe phage resembles a bubble when held up to the light through its unique reflection and spectrum of colors.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedDec 19, 2013
Sequencing FacilityUniversity of North Texas
Shotgun Sequencing MethodIon Torrent Sequencing
Approximate Shotgun Coverage335
Genome length (bp)57647
Character of genome ends3' Sticky Overhang
Overhang Length10 bases
Overhang SequenceCGGTAGGCGC
GC Content61.4%
Fasta file available?Yes: Download fasta file
Characterization
ClusterF
SubclusterF1
Other Cluster Members

Click to View

AbbyNormal (None)

Grib (None)

Kishmeesh (None)

KitCat (None)

MightyMorph (None)

Puck (None)

Renaud18 (None)

WIVsmall1220 (None)

Alexphander (F1)

Anaxagorus (F1)

Ant1Dodson (F1)

ArcusAngelus (F1)

Ardmore (F1)

Arienne (F1)

Asmart (F1)

Awesomesauce (F1)

Barson (F1)

Batiatus (F1)

BigPhil (F1)

Bipolar (F1)

BobaPhett (F1)

Bobi (F1)

Boomer (F1)

Braemar (F1)

Brocalys (F1)

Bubbles123 (F1)

BuzzLyseyear (F1)

Byougenkin (F1)

Cabrinians (F1)

Cakepop (F1)

CaptainTrips (F1)

Cerasum (F1)

Che8 (F1)

Chhibber (F1)

Chikondi (F1)

Chuckly (F1)

Clover (F1)

CoolGuy (F1)

Cornucopia (F1)

Daenerys (F1)

Danda (F1)

Dante (F1)

DaWorst (F1)

DCrust15 (F1)

DeadP (F1)

Desmond (F1)

DillTech15 (F1)

DirtMcgirt (F1)

DLane (F1)

Docouto (F1)

Dorothy (F1)

DotProduct (F1)

Drago (F1)

DRBy19 (F1)

Emma (F1)

Empress (F1)

Estave1 (F1)

Estella (F1)

Filuzino (F1)

Firehouse51 (F1)

Flathead (F1)

Florinda (F1)

Frankie (F1)

Fruitloop (F1)

FunOne (F1)

Galactic (F1)

Gardregs (F1)

Gendisarray (F1)

Genesis (F1)

Geralt (F1)

Girafales (F1)

Girr (F1)

GUmbie (F1)

Hades (F1)

Hamulus (F1)

Harley (F1)

Hegedechwinu (F1)

Ibhubesi (F1)

Inventum (F1)

IrishSherpFalk (F1)

James (F1)

Job42 (F1)

Judylove (F1)

Kalikimaka (F1)

Kersh (F1)

Kimberlium (F1)

KingMidas (F1)

Kingsley (F1)

Koella (F1)

Krakatau (F1)

KristaRAM (F1)

LillyLatzon (F1)

Llama (F1)

Llij (F1)

Lysinator (F1)

MacDrage (F1)

Mahavrat (F1)

Mantra (F1)

Mattes (F1)

McDiddy (F1)

Melissauren88 (F1)

MilleniumForce (F1)

MinionDave (F1)

Minnie (F1)

Misha28 (F1)

MisterCuddles (F1)

Mozy (F1)

Mutaforma13 (F1)

Nemain (F1)

Nitzel (F1)

Noodle (F1)

OfUltron (F1)

Ogopogo (F1)

OldBen (F1)

OlympiaSaint (F1)

Ovechkin (F1)

OwlsT2W (F1)

Pacc40 (F1)

Peanut21s (F1)

Phabio (F1)

Phasih (F1)

Phatniss (F1)

PhrankthaTank (F1)

Piper2020 (F1)

Pippy (F1)

Plackberry (F1)

Plumbus (F1)

PMC (F1)

Polka14 (F1)

PopTart (F1)

Priscilla (F1)

Prometheus (F1)

Quico (F1)

Ramsey (F1)

RitaG (F1)

Rocktrap (F1)

RockyHorror (F1)

Rombolo (F1)

Royals2015 (F1)

Ruby (F1)

S2Kari (F1)

S2TSquared (F1)

Saal (F1)

SaltyMike (F1)

SassyB (F1)

Scottish (F1)

Seagreen (F1)

SG4 (F1)

Sharpshooter (F1)

Shauna1 (F1)

SherL (F1)

ShiLan (F1)

SimranZ1 (F1)

SiSi (F1)

Sparkdehlily (F1)

Spartacus (F1)

Spoonbill (F1)

SuperGrey (F1)

SwagPigglett (F1)

Taj (F1)

TDanisky (F1)

TootsiePop (F1)

Tweety (F1)

UncleRicky (F1)

Velveteen (F1)

Wachhund (F1)

Wee (F1)

WheatBerry18 (F1)

Whouxphf (F1)

WillSterrel (F1)

WIVsmall (F1)

XFactor (F1)

Zerg (F1)

Avani (F2)

Che9d (F2)

Demsculpinboyz (F2)

Jabbawokkie (F2)

Yoshi (F2)

Zapner (F2)

Squirty (F3)

TChen (F4)

Cornie (F5)

Plaque NotesThe average size of the plaque is about 1 mm and resembles a near perfect circle.
MorphotypeSiphoviridae
Final annotation complete?No
Has been Phamerated?Yes
Gene List

Click to View

Bubbles123_1
(Terminase, small subunit)

Bubbles123_2
(Terminase, large subunit)

Bubbles123_3
(Portal protein)

Bubbles123_4
(Capsid maturation protease)

Bubbles123_5
(Scaffolding protein)

Bubbles123_6
(Major capsid protein)

Bubbles123_7
(Head-to-tail connector protein)

Bubbles123_8
(Head-to-tail connector protein)

Bubbles123_9
(Head-to-tail connector protein)

Bubbles123_10
(Head-to-tail connector protein)

Bubbles123_11
(Major tail protein)

Bubbles123_12
(Tail assembly chaperone)

Bubbles123_13
(Tail assembly chaperone)

Bubbles123_14
(HNH endonuclease)

Bubbles123_15
(Tape measure protein)

Bubbles123_16
(Minor tail protein)

Bubbles123_17
(Minor tail protein)

Bubbles123_18
(Minor tail protein)

Bubbles123_19
(Minor tail protein)

Bubbles123_20
(Minor tail protein, D-ala-D-ala carboxypeptidase)

Bubbles123_21

Bubbles123_22

Bubbles123_23

Bubbles123_24
(Minor tail protein)

Bubbles123_25

Bubbles123_26
(Helix-Turn-Helix DNA binding domain)

Bubbles123_27

Bubbles123_28

Bubbles123_29

Bubbles123_30

Bubbles123_31

Bubbles123_32
(Lysin A)

Bubbles123_33
(Lysin B)

Bubbles123_34
(Holin)

Bubbles123_35

Bubbles123_36

Bubbles123_37
(DnaQ-like exonuclease)

Bubbles123_38

Bubbles123_39

Bubbles123_40
(Integrase, (Y-int))

Bubbles123_41

Bubbles123_42
(Immunity repressor)

Bubbles123_43
(CRO (control of repressor s operator))

Bubbles123_44
(Antirepressor)

Bubbles123_45

Bubbles123_46

Bubbles123_47
(Excise)

Bubbles123_48

Bubbles123_49

Bubbles123_50

Bubbles123_51

Bubbles123_52

Bubbles123_53

Bubbles123_54
(WhiB family transcription factor)

Bubbles123_55

Bubbles123_56
(Helix-Turn-Helix DNA binding domain)

Bubbles123_57

Bubbles123_58

Bubbles123_59

Bubbles123_60

Bubbles123_61
(HNH endonuclease)

Bubbles123_62
(Helicase)

Bubbles123_63
(DNA methylase)

Bubbles123_64

Bubbles123_65

Bubbles123_66
(DNA methylase)

Bubbles123_67

Bubbles123_68

Bubbles123_69
(G-I-Y Y-I-G endonuclease)

Bubbles123_70

Bubbles123_71

Bubbles123_72

Bubbles123_73

Bubbles123_74

Bubbles123_75

Bubbles123_76

Bubbles123_77

Bubbles123_78

Bubbles123_79

Bubbles123_80

Bubbles123_81

Bubbles123_82

Bubbles123_83

Bubbles123_84

Bubbles123_85

Bubbles123_86

Bubbles123_87
(G-I-Y Y-I-G endonuclease)

Bubbles123_88

Bubbles123_89

Bubbles123_90

Bubbles123_91

Bubbles123_92

Bubbles123_93

Bubbles123_94

Bubbles123_95
(Glycosyltransferase)

Bubbles123_96

Bubbles123_97

Bubbles123_98

Bubbles123_99

Bubbles123_100
(HNH endonuclease)

Submitted Annotation in DNA Master FormatDownload
Submitted Minimal DNA Master FileDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionKY348865
Refseq NumberNone yet
Published in PaperPope, Bowman, Russell, et al 2015, eLIFE
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
Final DNAMaster FileDownload
GenBank File for PhameratorDownload