Mycobacterium phage Avani
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Detailed Information for Phage Avani
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByStacey Heaver
Year Found2011
Location FoundGettysburg, PA USA
Finding InstitutionGettysburg College
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS Coordinates39.834000 N, 77.235659 W Map
Discovery NotesSoil sample collected from damp soil on a grassy lawn; up to 3 cm depth; 80° F
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedFeb 1, 2012
Approximate Shotgun Coverage410
Genome length (bp)54470
Character of genome ends3' Sticky Overhang
Overhang Length10 bases
Overhang SequenceCTCAGGGCAT
GC Content61.0%
Fasta file available?Yes: Download fasta file
Characterization
ClusterF
SubclusterF2
Other Cluster Members

Click to View

AbbyNormal (None)

Grib (None)

Kishmeesh (None)

KitCat (None)

MightyMorph (None)

Puck (None)

Renaud18 (None)

WIVsmall1220 (None)

Alexphander (F1)

Anaxagorus (F1)

Ant1Dodson (F1)

ArcusAngelus (F1)

Ardmore (F1)

Arienne (F1)

Asmart (F1)

Awesomesauce (F1)

Barson (F1)

Batiatus (F1)

BigPhil (F1)

Bipolar (F1)

BobaPhett (F1)

Bobi (F1)

Boomer (F1)

Braemar (F1)

Brocalys (F1)

Bubbles123 (F1)

BuzzLyseyear (F1)

Byougenkin (F1)

Cabrinians (F1)

Cakepop (F1)

CaptainTrips (F1)

Cerasum (F1)

Che8 (F1)

Chhibber (F1)

Chikondi (F1)

Chuckly (F1)

Clover (F1)

CoolGuy (F1)

Cornucopia (F1)

Daenerys (F1)

Danda (F1)

Dante (F1)

DaWorst (F1)

DCrust15 (F1)

DeadP (F1)

Desmond (F1)

DillTech15 (F1)

DirtMcgirt (F1)

DLane (F1)

Docouto (F1)

Dorothy (F1)

DotProduct (F1)

Drago (F1)

DRBy19 (F1)

EleanorGeorge (F1)

Emma (F1)

Empress (F1)

Estave1 (F1)

Estella (F1)

Filuzino (F1)

Firehouse51 (F1)

Flathead (F1)

Florinda (F1)

Frankie (F1)

Fruitloop (F1)

FunOne (F1)

Galactic (F1)

Gardregs (F1)

Gendisarray (F1)

Genesis (F1)

Geralt (F1)

Girafales (F1)

Girr (F1)

GUmbie (F1)

Hades (F1)

Hamulus (F1)

Harley (F1)

Hegedechwinu (F1)

Ibhubesi (F1)

Inventum (F1)

IrishSherpFalk (F1)

James (F1)

Job42 (F1)

Judylove (F1)

Kalikimaka (F1)

Kersh (F1)

Kimberlium (F1)

KingMidas (F1)

Kingsley (F1)

Koella (F1)

Krakatau (F1)

KristaRAM (F1)

LillyLatzon (F1)

Llama (F1)

Llij (F1)

Lysinator (F1)

MacDrage (F1)

Mahavrat (F1)

Mantra (F1)

Mattes (F1)

McDiddy (F1)

Melissauren88 (F1)

MilleniumForce (F1)

MinionDave (F1)

Minnie (F1)

Misha28 (F1)

MisterCuddles (F1)

Mozy (F1)

Mutaforma13 (F1)

Nemain (F1)

Nitzel (F1)

Noodle (F1)

OfUltron (F1)

Ogopogo (F1)

OldBen (F1)

OlympiaSaint (F1)

Ovechkin (F1)

OwlsT2W (F1)

Pacc40 (F1)

Peanut21s (F1)

Phabio (F1)

Phasih (F1)

Phatniss (F1)

PhrankthaTank (F1)

Piper2020 (F1)

Pippy (F1)

Plackberry (F1)

Plumbus (F1)

PMC (F1)

Polka14 (F1)

PopTart (F1)

Priscilla (F1)

Prometheus (F1)

Quico (F1)

Ramsey (F1)

RitaG (F1)

Rocktrap (F1)

RockyHorror (F1)

Rombolo (F1)

Royals2015 (F1)

Ruby (F1)

S2Kari (F1)

S2TSquared (F1)

Saal (F1)

SaltyMike (F1)

SassyB (F1)

Scottish (F1)

Seagreen (F1)

SG4 (F1)

Sharpshooter (F1)

Shauna1 (F1)

SherL (F1)

ShiLan (F1)

SimranZ1 (F1)

SiSi (F1)

Sparkdehlily (F1)

Spartacus (F1)

Spikelee (F1)

Spoonbill (F1)

SuperGrey (F1)

SwagPigglett (F1)

Taj (F1)

TDanisky (F1)

TootsiePop (F1)

Tweety (F1)

UncleRicky (F1)

Velveteen (F1)

Wachhund (F1)

Wee (F1)

WheatBerry18 (F1)

Whouxphf (F1)

WillSterrel (F1)

WIVsmall (F1)

XFactor (F1)

Zerg (F1)

Avani (F2)

Che9d (F2)

Demsculpinboyz (F2)

Jabbawokkie (F2)

Yoshi (F2)

Zapner (F2)

Squirty (F3)

TChen (F4)

Cornie (F5)

Plaque NotesAfter 48 hours at 37° C plaques range in size from 0.56-1.7mm. Average plaque size is 1.2 mm. As time progresses plaques form turbid regions extending from the clear plaque boundaries.
MorphotypeSiphoviridae
Final annotation complete?Yes
Number of Genes107
Has been Phamerated?Yes
Gene List

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Avani_1
(HNH endonuclease domain)

Avani_2
(terminase, small subunit)

Avani_3

Avani_4
(portal)

Avani_5
(capsid maturation protease)

Avani_6
(scaffolding)

Avani_7
(major capsid)

Avani_8

Avani_9

Avani_10

Avani_11

Avani_12

Avani_13

Avani_14
(major tail)

Avani_15
(tail assembly chaperone)

Avani_16
(tail assembly chaperone)

Avani_17
(tapemeasure)

Avani_18
(minor tail)

Avani_19
(minor tail)

Avani_20
(minor tail)

Avani_21
(minor tail)

Avani_22
(minor tail)

Avani_23
(minor tail)

Avani_24
(minor tail)

Avani_25
(D-ala-D-ala carboxypeptidase)

Avani_26

Avani_27

Avani_28
(transcriptional regulator (AlpA-like))

Avani_29

Avani_30

Avani_31

Avani_32

Avani_33

Avani_34

Avani_35
(LysA)

Avani_36
(LysB)

Avani_37
(holin)

Avani_38

Avani_39

Avani_40

Avani_41

Avani_42

Avani_43

Avani_44

Avani_45

Avani_46

Avani_47

Avani_48

Avani_49

Avani_50
(Integrase, Y-Int)

Avani_51

Avani_52

Avani_53
(Immunity repressor)

Avani_54
(HTH DNA binding (putative Cro))

Avani_55

Avani_56

Avani_57

Avani_58

Avani_59

Avani_60

Avani_61

Avani_62

Avani_63

Avani_64

Avani_65
(WhiB)

Avani_66

Avani_67
(WhiB)

Avani_68
(HTH DNA binding)

Avani_69

Avani_70

Avani_71

Avani_72

Avani_73
(HNH endonuclease domain)

Avani_74

Avani_75
(methylase)

Avani_76

Avani_77

Avani_78

Avani_79

Avani_80
(GIY-YIG endonuclease)

Avani_81

Avani_82

Avani_83

Avani_84

Avani_85

Avani_86

Avani_87
(HIT family hydrolase)

Avani_88

Avani_89

Avani_90

Avani_91

Avani_92

Avani_93

Avani_94

Avani_95

Avani_96

Avani_97

Avani_98

Avani_99

Avani_100

Avani_101

Avani_102

Avani_103
(transcriptional regulator (AlpA-like))

Avani_104

Avani_105
(Glycosyl transferase/methyl transferase)

Avani_106
(galactosyl transferase)

Avani_107
(glycosyltransferase)

Publication Info
Uploaded to GenBank?Yes
GenBank AccessionJQ809702
Refseq NumberNC_023698
Published in PaperPope, Bowman, Russell, et al 2015, eLIFE
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
EM PictureDownload
Final DNAMaster FileDownload