Mycobacterium phage Avani
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Detailed Information for Phage Avani
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByStacey Heaver
Year Found2011
Location FoundGettysburg, PA USA
Finding InstitutionGettysburg College
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS Coordinates39.834000 N, 77.235659 W Map
Discovery NotesSoil sample collected from damp soil on a grassy lawn; up to 3 cm depth; 80° F
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedFeb 1, 2012
Approximate Shotgun Coverage410
Genome length (bp)54470
Character of genome ends3' Sticky Overhang
Overhang Length10 bases
Overhang SequenceCTCAGGGCAT
GC Content61.0%
Fasta file available?Yes: Download fasta file
Characterization
ClusterF
SubclusterF2
Cluster Life CycleTemperate
Other Cluster Members

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AbbyNormal (None)

Grib (None)

Kishmeesh (None)

KitCat (None)

MightyMorph (None)

Puck (None)

Renaud18 (None)

WIVsmall1220 (None)

Alexphander (F1)

Anaxagorus (F1)

Ant1Dodson (F1)

ArcusAngelus (F1)

Ardmore (F1)

Arienne (F1)

Asmart (F1)

Awesomesauce (F1)

BabytheFifth (F1)

Barson (F1)

Batiatus (F1)

BigPhil (F1)

BigPop (F1)

Bipolar (F1)

BobaPhett (F1)

Bobi (F1)

BodEinwohner17 (F1)

BoomCrackaPop (F1)

Boomer (F1)

Braemar (F1)

Brocalys (F1)

Bubbles123 (F1)

Buffalo (F1)

Burwell21 (F1)

BuzzLyseyear (F1)

ByChance (F1)

Byougenkin (F1)

Cabrinians (F1)

Cakepop (F1)

CaptainTrips (F1)

Cerasum (F1)

Che8 (F1)

Chhibber (F1)

Chikondi (F1)

Chuckly (F1)

Clifton (F1)

Clover (F1)

CoolGuy (F1)

Cornucopia (F1)

Daenerys (F1)

Danda (F1)

Dante (F1)

DaWorst (F1)

DCrust15 (F1)

DeadP (F1)

Desmond (F1)

DillTech15 (F1)

DirtMcgirt (F1)

DLane (F1)

Docouto (F1)

Dorothy (F1)

DotProduct (F1)

Drago (F1)

DRBy19 (F1)

Eish (F1)

EleanorGeorge (F1)

Emma (F1)

Empress (F1)

Enby (F1)

Estave1 (F1)

Estella (F1)

Extra (F1)

Filuzino (F1)

Firehouse51 (F1)

Flathead (F1)

Florinda (F1)

Forneus (F1)

Frankie (F1)

Fruitloop (F1)

FunOne (F1)

Galactic (F1)

Gardregs (F1)

Gendisarray (F1)

Genesis (F1)

Geralt (F1)

Girafales (F1)

Girr (F1)

Gorge (F1)

GreatPumpkin (F1)

GUmbie (F1)

Hades (F1)

Hamulus (F1)

Harley (F1)

Hegedechwinu (F1)

Ibhubesi (F1)

Inventum (F1)

IrishSherpFalk (F1)

James (F1)

Job42 (F1)

JoeyJr (F1)

Judylove (F1)

Kalikimaka (F1)

Katya (F1)

Kersh (F1)

KewGel (F1)

Kimberlium (F1)

KingMidas (F1)

Kingsley (F1)

Koella (F1)

Krakatau (F1)

KristaRAM (F1)

Latretium (F1)

LillyLatzon (F1)

LilMoolah (F1)

Lizziana (F1)

Llama (F1)

Llij (F1)

Lorde (F1)

Lysinator (F1)

MacDrage (F1)

Mahavrat (F1)

Mantra (F1)

Mattes (F1)

McDiddy (F1)

Melissauren88 (F1)

Mille (F1)

MilleniumForce (F1)

MinionDave (F1)

Minnie (F1)

Misha28 (F1)

MisterCuddles (F1)

Mozy (F1)

Mutaforma13 (F1)

Nemain (F1)

Nimbo (F1)

Nitzel (F1)

Nivrat (F1)

Noodle (F1)

NormanBulbieJr (F1)

Ochi17 (F1)

OfUltron (F1)

Ogopogo (F1)

OldBen (F1)

OlympiaSaint (F1)

Ovechkin (F1)

OwlsT2W (F1)

Pacc40 (F1)

Peanut21s (F1)

Phabio (F1)

PHappiness (F1)

Phasih (F1)

Phatniss (F1)

PhrankthaTank (F1)

Piper2020 (F1)

Pippy (F1)

Plackberry (F1)

Plumbus (F1)

PMC (F1)

Poenanya (F1)

Polka14 (F1)

Pollywog (F1)

PopTart (F1)

Priscilla (F1)

Prometheus (F1)

QuickMath (F1)

Quico (F1)

Ramsey (F1)

RitaG (F1)

Rocktrap (F1)

RockyHorror (F1)

Rombolo (F1)

Royals2015 (F1)

Ruby (F1)

S2Kari (F1)

S2TSquared (F1)

Saal (F1)

SaltyMike (F1)

Sandalphon (F1)

SassyB (F1)

Scottish (F1)

Seagreen (F1)

SG4 (F1)

Sharpshooter (F1)

Shauna1 (F1)

SherL (F1)

ShiLan (F1)

SimranZ1 (F1)

SiSi (F1)

Sparkdehlily (F1)

Spartacus (F1)

Spikelee (F1)

Spoonbill (F1)

StacysMom (F1)

SuperGrey (F1)

SwagPigglett (F1)

Taj (F1)

TDanisky (F1)

TonaldTDrump (F1)

TootsiePop (F1)

Tweety (F1)

UncleRicky (F1)

Velveteen (F1)

Viva (F1)

Wachhund (F1)

Wee (F1)

WheatBerry18 (F1)

Whouxphf (F1)

WillSterrel (F1)

WIVsmall (F1)

XFactor (F1)

Zerg (F1)

Avani (F2)

Che9d (F2)

Demsculpinboyz (F2)

Jabbawokkie (F2)

Yoshi (F2)

Zapner (F2)

Squirty (F3)

TChen (F4)

ThetaBob (F4)

Cornie (F5)

Annotation StatusIn GenBank
Plaque NotesAfter 48 hours at 37° C plaques range in size from 0.56-1.7mm. Average plaque size is 1.2 mm. As time progresses plaques form turbid regions extending from the clear plaque boundaries.
MorphotypeSiphoviridae
Number of Genes107
Has been Phamerated?Yes
Gene List

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Avani_1
(HNH endonuclease domain protein)

Avani_2
(terminase small subunit)

Avani_3

Avani_4
(portal protein)

Avani_5
(capsid maturation protease)

Avani_6
(scaffolding protein)

Avani_7
(major capsid protein)

Avani_8

Avani_9

Avani_10

Avani_11

Avani_12

Avani_13

Avani_14
(major tail protein)

Avani_15
(tail assembly chaperone)

Avani_16
(tail assembly chaperone)

Avani_17
(tapemeasure protein)

Avani_18
(minor tail protein)

Avani_19
(minor tail protein)

Avani_20
(minor tail protein)

Avani_21
(minor tail protein)

Avani_22
(minor tail protein)

Avani_23
(minor tail protein)

Avani_24
(minor tail protein)

Avani_25
(D-Ala-D-Ala carboxypeptidase)

Avani_26

Avani_27

Avani_28
(AlpA-like transcriptional regulator)

Avani_29

Avani_30

Avani_31

Avani_32

Avani_33

Avani_34

Avani_35
(lysin A)

Avani_36
(lysin B)

Avani_37
(holin)

Avani_38

Avani_39

Avani_40

Avani_41

Avani_42

Avani_43

Avani_44

Avani_45

Avani_46

Avani_47

Avani_48

Avani_49

Avani_50
(integrase)

Avani_51

Avani_52

Avani_53
(immunity repressor)

Avani_54
(HTH DNA binding domain protein)

Avani_55

Avani_56

Avani_57

Avani_58

Avani_59

Avani_60

Avani_61

Avani_62

Avani_63

Avani_64

Avani_65
(WhiB)

Avani_66

Avani_67
(WhiB)

Avani_68
(HTH DNA binding domain protein)

Avani_69

Avani_70

Avani_71

Avani_72

Avani_73
(HNH endonuclease domain protein)

Avani_74

Avani_75
(methylase)

Avani_76

Avani_77

Avani_78

Avani_79

Avani_80
(GIY-YIG endonuclease)

Avani_81

Avani_82

Avani_83

Avani_84

Avani_85

Avani_86

Avani_87
(HIT family hydrolase)

Avani_88

Avani_89

Avani_90

Avani_91

Avani_92

Avani_93

Avani_94

Avani_95

Avani_96

Avani_97

Avani_98

Avani_99

Avani_100

Avani_101

Avani_102

Avani_103
(AlpA-like transcriptional regulator)

Avani_104

Avani_105
(glycosyltransferase/methyltransferase)

Avani_106
(galactosyltransferase)

Avani_107
(glycosyltransferase)

Publication Info
Uploaded to GenBank?Yes
GenBank AccessionJQ809702
Refseq NumberNC_023698
Published in PaperPope, Bowman, Russell, et al 2015, eLIFE: Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity
Archiving Info
Archiving status Archived
SEA Designator 2011GTTYavaniSH
Pitt Freezer Box# 24
Pitt Freezer Box Grid# 35
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
EM PictureDownload
Final DNAMaster FileDownload