Mycobacterium phage SiSi
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Detailed Information for Phage SiSi
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByMariah Minder
Year Found2011
Location FoundSpokane, WA USA
Finding InstitutionGonzaga University
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS Coordinates47.667056 N, 117.402794 W Map
Discovery NotesFound in soil in flower bed, slightly moist, outside temperature 67° F, 1 inch deep.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedFeb 23, 2012
Genome length (bp)56279
Character of genome ends3' Sticky Overhang
Overhang Length10 bases
Overhang SequenceCGGAAGGCGC
GC Content61.5%
Fasta file available?Yes: Download fasta file
Characterization
ClusterF
SubclusterF1
Cluster Life CycleTemperate
Other Cluster Members

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AbbyNormal (None)

Grib (None)

Kishmeesh (None)

KitCat (None)

MightyMorph (None)

Puck (None)

Renaud18 (None)

WIVsmall1220 (None)

Alexphander (F1)

Anaxagorus (F1)

Ant1Dodson (F1)

ArcusAngelus (F1)

Ardmore (F1)

Arienne (F1)

Asmart (F1)

Awesomesauce (F1)

BabytheFifth (F1)

Barson (F1)

Batiatus (F1)

BigPhil (F1)

Bipolar (F1)

BobaPhett (F1)

Bobi (F1)

BodEinwohner17 (F1)

BoomCrackaPop (F1)

Boomer (F1)

Braemar (F1)

Brocalys (F1)

Bubbles123 (F1)

Burwell21 (F1)

BuzzLyseyear (F1)

ByChance (F1)

Byougenkin (F1)

Cabrinians (F1)

Cakepop (F1)

CaptainTrips (F1)

Cerasum (F1)

Che8 (F1)

Chhibber (F1)

Chikondi (F1)

Chuckly (F1)

Clifton (F1)

Clover (F1)

CoolGuy (F1)

Cornucopia (F1)

Daenerys (F1)

Danda (F1)

Dante (F1)

DaWorst (F1)

DCrust15 (F1)

DeadP (F1)

Desmond (F1)

DillTech15 (F1)

DirtMcgirt (F1)

DLane (F1)

Docouto (F1)

Dorothy (F1)

DotProduct (F1)

Drago (F1)

DRBy19 (F1)

Eish (F1)

EleanorGeorge (F1)

Emma (F1)

Empress (F1)

Enby (F1)

Estave1 (F1)

Estella (F1)

Fancypants (F1)

Filuzino (F1)

Firehouse51 (F1)

Flathead (F1)

Florinda (F1)

Frankie (F1)

Fruitloop (F1)

FunOne (F1)

Galactic (F1)

Gardregs (F1)

Gendisarray (F1)

Genesis (F1)

Geralt (F1)

Girafales (F1)

Girr (F1)

Gorge (F1)

GreatPumpkin (F1)

GUmbie (F1)

Hades (F1)

Hamulus (F1)

Harley (F1)

Hegedechwinu (F1)

Ibhubesi (F1)

Inventum (F1)

IrishSherpFalk (F1)

James (F1)

Job42 (F1)

JoeyJr (F1)

Judylove (F1)

Kalikimaka (F1)

Katya (F1)

Kersh (F1)

Kimberlium (F1)

KingMidas (F1)

Kingsley (F1)

Koella (F1)

Krakatau (F1)

KristaRAM (F1)

Latretium (F1)

LillyLatzon (F1)

LilMoolah (F1)

Lizziana (F1)

Llama (F1)

Llij (F1)

Lorde (F1)

Lysinator (F1)

MacDrage (F1)

Mahavrat (F1)

Mantra (F1)

Mattes (F1)

McDiddy (F1)

Melissauren88 (F1)

MerrillCO18 (F1)

Mille (F1)

MilleniumForce (F1)

MinionDave (F1)

Minnie (F1)

Misha28 (F1)

MisterCuddles (F1)

Modragons (F1)

Mozy (F1)

Ms6 (F1)

Mutaforma13 (F1)

Myosotis (F1)

Nemain (F1)

Nimbo (F1)

Nitzel (F1)

Nivrat (F1)

Noodle (F1)

NormanBulbieJr (F1)

Ochi17 (F1)

OfUltron (F1)

Ogopogo (F1)

OldBen (F1)

OlympiaSaint (F1)

Ovechkin (F1)

OwlsT2W (F1)

Pacc40 (F1)

Peanut21s (F1)

Phabio (F1)

PHappiness (F1)

Phasih (F1)

Phatniss (F1)

PhrankthaTank (F1)

Piper2020 (F1)

Pippy (F1)

Plackberry (F1)

Plumbus (F1)

PMC (F1)

Poenanya (F1)

Polka14 (F1)

Pollywog (F1)

PopTart (F1)

Priscilla (F1)

Prometheus (F1)

QuickMath (F1)

Quico (F1)

Ramsey (F1)

RitaG (F1)

Rocktrap (F1)

RockyHorror (F1)

Rombolo (F1)

Royals2015 (F1)

Ruby (F1)

S2Kari (F1)

S2TSquared (F1)

Saal (F1)

SaltyMike (F1)

Sandalphon (F1)

SassyB (F1)

Scottish (F1)

Seagreen (F1)

SG4 (F1)

Sharpshooter (F1)

Shauna1 (F1)

SherL (F1)

ShiLan (F1)

SimranZ1 (F1)

SiSi (F1)

Sparkdehlily (F1)

Spartacus (F1)

Spikelee (F1)

Spoonbill (F1)

Strokeseat (F1)

SuperGrey (F1)

SwagPigglett (F1)

Taj (F1)

Taus (F1)

TDanisky (F1)

TonaldTDrump (F1)

TootsiePop (F1)

Tweety (F1)

UncleRicky (F1)

Velveteen (F1)

Wachhund (F1)

Wee (F1)

WheatBerry18 (F1)

Whouxphf (F1)

WillSterrel (F1)

WIVsmall (F1)

XFactor (F1)

Zerg (F1)

Avani (F2)

Che9d (F2)

Demsculpinboyz (F2)

Jabbawokkie (F2)

Yoshi (F2)

Zapner (F2)

Squirty (F3)

TChen (F4)

ThetaBob (F4)

Cornie (F5)

Annotation StatusIn GenBank
Plaque NotesPlaques are clear with, turbid halos. All plaques are similar in size, plaque size however very greatly depending on incubation time.
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

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SiSi_1
(terminase small subunit)

SiSi_2
(terminase large subunit)

SiSi_3
(portal protein)

SiSi_4
(capsid maturation protease)

SiSi_5
(scaffolding protein)

SiSi_6
(major capsid protein)

SiSi_7

SiSi_8

SiSi_9

SiSi_10

SiSi_11
(major tail subunit)

SiSi_12
(tail assembly chaperone)

SiSi_13
(tail assembly chaperone)

SiSi_14
(tapemeasure)

SiSi_15
(minor tail protein)

SiSi_16
(minor tail protein)

SiSi_17
(minor tail protein)

SiSi_18
(minor tail protein)

SiSi_19
(D-ala-D-ala-carboxypeptidase)

SiSi_20

SiSi_21

SiSi_22

SiSi_23

SiSi_24

SiSi_25

SiSi_26

SiSi_27

SiSi_28

SiSi_29

SiSi_30
(lysin A)

SiSi_31
(lysin B)

SiSi_32
(holin)

SiSi_33

SiSi_34

SiSi_35
(DnaQ-like exonuclease)

SiSi_36

SiSi_37

SiSi_38

SiSi_39

SiSi_40
(HTH DNA binding domain protein)

SiSi_41

SiSi_42

SiSi_43
(integrase (y-int))

SiSi_44

SiSi_45
(immunity repressor)

SiSi_46
(HTH DNA binding domain protein)

SiSi_47
(prophage antirepressor)

SiSi_48

SiSi_49

SiSi_50

SiSi_51

SiSi_52

SiSi_53

SiSi_54

SiSi_55
(WhiB)

SiSi_56

SiSi_57
(WhiB)

SiSi_58
(HTH DNA binding domain protein)

SiSi_59

SiSi_60

SiSi_61

SiSi_62

SiSi_63
(HNH endonuclease domain protein)

SiSi_64

SiSi_65
(DNA methylase)

SiSi_66

SiSi_67

SiSi_68
(putative exonuclease)

SiSi_69
(methylase)

SiSi_70

SiSi_71

SiSi_72

SiSi_73

SiSi_74

SiSi_75

SiSi_76

SiSi_77

SiSi_78

SiSi_79

SiSi_80

SiSi_81

SiSi_82

SiSi_83

SiSi_84

SiSi_85

SiSi_86

SiSi_87

SiSi_88

SiSi_89
(GIY-YIG DNA binding domain from nucleotide excision repair endonuclease)

SiSi_90

SiSi_91

SiSi_92

SiSi_93

SiSi_94

SiSi_95

SiSi_96
(polypeptide N-acetylgalactosaminyltransferase)

SiSi_97

SiSi_98
(glycosyltransferase-like domain protein)

SiSi_99
(HNH endonuclease)

Publication Info
Uploaded to GenBank?Yes
GenBank AccessionKC661278
Refseq NumberNC_021301
Published in PaperPope, Bowman, Russell, et al 2015, eLIFE: Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity
Archiving Info
Archiving status Archived
SEA Designator 2011GONZsisiMAM
Pitt Freezer Box# 24
Pitt Freezer Box Grid# 55
Available Files
Plaque PictureDownload