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Mycobacterium phage Inventum
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Detailed Information for Phage Inventum
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByMatthew Karssen
Year Found2012
Location FoundHolland, MI United States
Finding InstitutionHope College
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS Coordinates42.787921 N, 86.102354 W Map
Discovery NotesIsolated from enriched soil sample. The soil was taken from about 4 cm down, approximately two feet from a high traffic sidewalk on Hope College's campus. The soil was slightly sandy and damp, and was under the shade of a moderate sized bush. There was no grass cover, but a minor amount of decomposing matter.
Naming NotesInventum (Pronounced: een-wen-toom) means "Discovery" in Latin. I've always loved the Latin language, so I decided to name my phage in Latin.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 11, 2013
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIon Torrent Sequencing
Approximate Shotgun Coverage600
Sanger Finishing Reactions6
Genome length (bp)57052
Character of genome ends3' Sticky Overhang
Overhang Length10 bases
Overhang SequenceCGGACGGCGC
GC Content61.4%
Fasta file available?Yes: Download fasta file
Characterization
ClusterF
SubclusterF1
Other Cluster Members

Click to View

AbbyNormal (None)

Grib (None)

Kishmeesh (None)

KitCat (None)

MightyMorph (None)

Puck (None)

Renaud18 (None)

WIVsmall1220 (None)

Alexphander (F1)

Anaxagorus (F1)

Ant1Dodson (F1)

ArcusAngelus (F1)

Ardmore (F1)

Arienne (F1)

Asmart (F1)

Awesomesauce (F1)

Barson (F1)

Batiatus (F1)

BigPhil (F1)

Bipolar (F1)

BobaPhett (F1)

Bobi (F1)

Boomer (F1)

Braemar (F1)

Brocalys (F1)

Bubbles123 (F1)

BuzzLyseyear (F1)

Byougenkin (F1)

Cabrinians (F1)

Cakepop (F1)

CaptainTrips (F1)

Cerasum (F1)

Che8 (F1)

Chhibber (F1)

Chikondi (F1)

Chuckly (F1)

Clover (F1)

CoolGuy (F1)

Cornucopia (F1)

Daenerys (F1)

Danda (F1)

Dante (F1)

DaWorst (F1)

DCrust15 (F1)

DeadP (F1)

Desmond (F1)

DillTech15 (F1)

DirtMcgirt (F1)

DLane (F1)

Docouto (F1)

Dorothy (F1)

DotProduct (F1)

Drago (F1)

DRBy19 (F1)

Emma (F1)

Empress (F1)

Estave1 (F1)

Estella (F1)

Filuzino (F1)

Firehouse51 (F1)

Flathead (F1)

Florinda (F1)

Frankie (F1)

Fruitloop (F1)

FunOne (F1)

Galactic (F1)

Gardregs (F1)

Gendisarray (F1)

Genesis (F1)

Geralt (F1)

Girafales (F1)

Girr (F1)

GUmbie (F1)

Hades (F1)

Hamulus (F1)

Harley (F1)

Hegedechwinu (F1)

Ibhubesi (F1)

Inventum (F1)

IrishSherpFalk (F1)

James (F1)

Job42 (F1)

Judylove (F1)

Kalikimaka (F1)

Kersh (F1)

Kimberlium (F1)

KingMidas (F1)

Kingsley (F1)

Koella (F1)

Krakatau (F1)

KristaRAM (F1)

LillyLatzon (F1)

Llama (F1)

Llij (F1)

Lysinator (F1)

MacDrage (F1)

Mahavrat (F1)

Mantra (F1)

Mattes (F1)

McDiddy (F1)

Melissauren88 (F1)

MilleniumForce (F1)

MinionDave (F1)

Minnie (F1)

Misha28 (F1)

MisterCuddles (F1)

Mozy (F1)

Mutaforma13 (F1)

Nemain (F1)

Nitzel (F1)

Noodle (F1)

OfUltron (F1)

Ogopogo (F1)

OldBen (F1)

OlympiaSaint (F1)

Ovechkin (F1)

OwlsT2W (F1)

Pacc40 (F1)

Peanut21s (F1)

Phabio (F1)

Phasih (F1)

Phatniss (F1)

PhrankthaTank (F1)

Piper2020 (F1)

Pippy (F1)

Plackberry (F1)

Plumbus (F1)

PMC (F1)

Polka14 (F1)

PopTart (F1)

Priscilla (F1)

Prometheus (F1)

Quico (F1)

Ramsey (F1)

RitaG (F1)

Rocktrap (F1)

RockyHorror (F1)

Rombolo (F1)

Royals2015 (F1)

Ruby (F1)

S2Kari (F1)

S2TSquared (F1)

Saal (F1)

SaltyMike (F1)

SassyB (F1)

Scottish (F1)

Seagreen (F1)

SG4 (F1)

Sharpshooter (F1)

Shauna1 (F1)

SherL (F1)

ShiLan (F1)

SimranZ1 (F1)

SiSi (F1)

Sparkdehlily (F1)

Spartacus (F1)

Spoonbill (F1)

SuperGrey (F1)

SwagPigglett (F1)

Taj (F1)

TDanisky (F1)

TootsiePop (F1)

Tweety (F1)

UncleRicky (F1)

Velveteen (F1)

Wachhund (F1)

Wee (F1)

WheatBerry18 (F1)

Whouxphf (F1)

WillSterrel (F1)

WIVsmall (F1)

XFactor (F1)

Zerg (F1)

Avani (F2)

Che9d (F2)

Demsculpinboyz (F2)

Jabbawokkie (F2)

Yoshi (F2)

Zapner (F2)

Squirty (F3)

TChen (F4)

Cornie (F5)

Plaque NotesPlaques were oblong, measuring approximately 2.5 x 3.5 mm at 24 hours, and about 3.5 x 4.5 mm at 48 hours. The plaques showed two distinct areas of turbidity. The inner 1 - 1.5 mm (diameter) was visibly less turbid than the outer area. Plaque size was very density independent, only changing slightly with differences in number of plaques on the plate.
MorphotypeSiphoviridae
Final annotation complete?Yes
Number of Genes102
Has been Phamerated?Yes
Gene List

Click to View

Inventum_1
(Terminase, small subunit)

Inventum_2
(Terminase, large subunit)

Inventum_3
(Portal)

Inventum_4
(Capsid maturation protease)

Inventum_5
(Scaffold)

Inventum_6
(Major capsid)

Inventum_7
(Head-to-tail connector protein)

Inventum_8
(Head-to-tail connector protein)

Inventum_9
(Head-to-tail connector protein)

Inventum_10
(Head-to-tail connector protein)

Inventum_11
(Major tail subunit)

Inventum_12
(Tail assembly chaperone)

Inventum_13
(Tail assembly chaperone)

Inventum_14
(Tapemeasure)

Inventum_15
(Minor tail subunit)

Inventum_16
(Minor tail subunit)

Inventum_17
(Minor tail subunit)

Inventum_18
(Minor tail subunit)

Inventum_19
(D-ala-D-ala carboxypeptidase)

Inventum_20

Inventum_21

Inventum_22

Inventum_23

Inventum_24

Inventum_25
(Helix-turn-helix domain.)

Inventum_26

Inventum_27

Inventum_28

Inventum_29

Inventum_30
(Lysin A)

Inventum_31
(Lysin B)

Inventum_32
(Holin)

Inventum_33

Inventum_34

Inventum_35
(DNA Q-like exonuclease)

Inventum_36

Inventum_37

Inventum_38

Inventum_39
(HTH DNA binding)

Inventum_40
(Integrase)

Inventum_41

Inventum_42
(Immunity repressor)

Inventum_43

Inventum_44

Inventum_45

Inventum_46

Inventum_47

Inventum_48

Inventum_49

Inventum_50

Inventum_51

Inventum_52
(WhiB)

Inventum_53

Inventum_54
(WhiB)

Inventum_55

Inventum_56

Inventum_57

Inventum_58

Inventum_59
(RecA)

Inventum_60

Inventum_61
(HNH endonuclease)

Inventum_62

Inventum_63

Inventum_64

Inventum_65

Inventum_66

Inventum_67

Inventum_68
(DNA methylase)

Inventum_69
(DNA methylase)

Inventum_70

Inventum_71

Inventum_72
(DNA methylase)

Inventum_73

Inventum_74

Inventum_75

Inventum_76

Inventum_77

Inventum_78

Inventum_79

Inventum_80

Inventum_81

Inventum_82

Inventum_83

Inventum_84

Inventum_85

Inventum_86

Inventum_87

Inventum_88

Inventum_89

Inventum_90

Inventum_91

Inventum_92
(HTH DNA binding)

Inventum_93

Inventum_94

Inventum_95

Inventum_96

Inventum_97

Inventum_98

Inventum_99
(Galactosyltransferase)

Inventum_100

Inventum_101
(Glycosyltransferase)

Inventum_102
(HNH endonuclease)

Submitted Annotation in DNA Master FormatDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionKM066034
Refseq NumberNC_026596
Published in PaperPope, Bowman, Russell, et al 2015, eLIFE
Available Files
Restriction Digest PictureDownload