Mycobacterium phage Empress
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Detailed Information for Phage Empress
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByGabe Schroeder
Year Found2012
Location FoundPittsburgh, PA United States
Finding InstitutionUniversity of Pittsburgh
ProgramPhage Hunters Integrating Research and Education
From enriched soil sample?No
Isolation TemperatureNot entered
GPS Coordinates40.44 N, 79.95 W Map
Discovery Notes
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedMay 31, 2013
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIon Torrent Sequencing
Approximate Shotgun Coverage452
Sanger Finishing Reactions15
Genome length (bp)57155
Character of genome ends3' Sticky Overhang
Overhang Length10 bases
Overhang SequenceCGGACGGCGC
GC Content61.5%
Fasta file available?Yes: Download fasta file
Characterization
ClusterF
SubclusterF1
Other Cluster Members

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AbbyNormal (None)

Grib (None)

Kishmeesh (None)

KitCat (None)

MightyMorph (None)

Puck (None)

Renaud18 (None)

WIVsmall1220 (None)

Alexphander (F1)

Anaxagorus (F1)

Ant1Dodson (F1)

ArcusAngelus (F1)

Ardmore (F1)

Arienne (F1)

Asmart (F1)

Awesomesauce (F1)

Barson (F1)

Batiatus (F1)

BigPhil (F1)

Bipolar (F1)

BobaPhett (F1)

Bobi (F1)

Boomer (F1)

Braemar (F1)

Brocalys (F1)

Bubbles123 (F1)

BuzzLyseyear (F1)

Byougenkin (F1)

Cabrinians (F1)

Cakepop (F1)

CaptainTrips (F1)

Cerasum (F1)

Che8 (F1)

Chhibber (F1)

Chikondi (F1)

Chuckly (F1)

Clover (F1)

CoolGuy (F1)

Cornucopia (F1)

Daenerys (F1)

Danda (F1)

Dante (F1)

DaWorst (F1)

DCrust15 (F1)

DeadP (F1)

Desmond (F1)

DillTech15 (F1)

DirtMcgirt (F1)

DLane (F1)

Docouto (F1)

Dorothy (F1)

DotProduct (F1)

Drago (F1)

DRBy19 (F1)

EleanorGeorge (F1)

Emma (F1)

Empress (F1)

Estave1 (F1)

Estella (F1)

Filuzino (F1)

Firehouse51 (F1)

Flathead (F1)

Florinda (F1)

Frankie (F1)

Fruitloop (F1)

FunOne (F1)

Galactic (F1)

Gardregs (F1)

Gendisarray (F1)

Genesis (F1)

Geralt (F1)

Girafales (F1)

Girr (F1)

GUmbie (F1)

Hades (F1)

Hamulus (F1)

Harley (F1)

Hegedechwinu (F1)

Ibhubesi (F1)

Inventum (F1)

IrishSherpFalk (F1)

James (F1)

Job42 (F1)

Judylove (F1)

Kalikimaka (F1)

Kersh (F1)

Kimberlium (F1)

KingMidas (F1)

Kingsley (F1)

Koella (F1)

Krakatau (F1)

KristaRAM (F1)

LillyLatzon (F1)

Llama (F1)

Llij (F1)

Lysinator (F1)

MacDrage (F1)

Mahavrat (F1)

Mantra (F1)

Mattes (F1)

McDiddy (F1)

Melissauren88 (F1)

MilleniumForce (F1)

MinionDave (F1)

Minnie (F1)

Misha28 (F1)

MisterCuddles (F1)

Mozy (F1)

Mutaforma13 (F1)

Nemain (F1)

Nitzel (F1)

Noodle (F1)

OfUltron (F1)

Ogopogo (F1)

OldBen (F1)

OlympiaSaint (F1)

Ovechkin (F1)

OwlsT2W (F1)

Pacc40 (F1)

Peanut21s (F1)

Phabio (F1)

Phasih (F1)

Phatniss (F1)

PhrankthaTank (F1)

Piper2020 (F1)

Pippy (F1)

Plackberry (F1)

Plumbus (F1)

PMC (F1)

Polka14 (F1)

PopTart (F1)

Priscilla (F1)

Prometheus (F1)

Quico (F1)

Ramsey (F1)

RitaG (F1)

Rocktrap (F1)

RockyHorror (F1)

Rombolo (F1)

Royals2015 (F1)

Ruby (F1)

S2Kari (F1)

S2TSquared (F1)

Saal (F1)

SaltyMike (F1)

SassyB (F1)

Scottish (F1)

Seagreen (F1)

SG4 (F1)

Sharpshooter (F1)

Shauna1 (F1)

SherL (F1)

ShiLan (F1)

SimranZ1 (F1)

SiSi (F1)

Sparkdehlily (F1)

Spartacus (F1)

Spikelee (F1)

Spoonbill (F1)

SuperGrey (F1)

SwagPigglett (F1)

Taj (F1)

TDanisky (F1)

TootsiePop (F1)

Tweety (F1)

UncleRicky (F1)

Velveteen (F1)

Wachhund (F1)

Wee (F1)

WheatBerry18 (F1)

Whouxphf (F1)

WillSterrel (F1)

WIVsmall (F1)

XFactor (F1)

Zerg (F1)

Avani (F2)

Che9d (F2)

Demsculpinboyz (F2)

Jabbawokkie (F2)

Yoshi (F2)

Zapner (F2)

Squirty (F3)

TChen (F4)

Cornie (F5)

MorphotypeSiphoviridae
Final annotation complete?Yes
Number of Genes104
Has been Phamerated?Yes
Gene List

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Empress_1
(Terminase, small subunit)

Empress_2
(Terminase, large subunit)

Empress_3
(Portal protein)

Empress_4
(Capsid maturation protease)

Empress_5
(Scaffolding protein)

Empress_6
(Major capsid protein)

Empress_7
(Head-to-tail-connector protein)

Empress_8
(Head-to-tail-connector protein)

Empress_9
(Head-to-tail-connector protein)

Empress_10
(Head-to-tail-connector protein)

Empress_11
(Major tail subunit)

Empress_12
(Tail assembly chaperone)

Empress_13
(Tail assembly chaperone)

Empress_14
(Tape measure protein)

Empress_15
(Transposase DNA domains)

Empress_16
(Minor tail protein)

Empress_17
(Minor tail protein)

Empress_18
(Minor tail protein)

Empress_19
(Minor tail protein)

Empress_20
(D-ala D-ala carboypeptidase)

Empress_21
(Minor tail protein)

Empress_22

Empress_23

Empress_24

Empress_25

Empress_26

Empress_27

Empress_28

Empress_29

Empress_30

Empress_31
(Lysin A)

Empress_32
(Lysin B)

Empress_33
(Holin)

Empress_34

Empress_35

Empress_36
(DNA Q-like exonuclease)

Empress_37

Empress_38

Empress_39

Empress_40

Empress_41
(DNA- binding protein)

Empress_42

Empress_43
(Integrase (Y-Int))

Empress_44

Empress_45

Empress_46
(Immunity Repressor)

Empress_47
(HTH DNA Binding)

Empress_48

Empress_49

Empress_50

Empress_51

Empress_52

Empress_53

Empress_54

Empress_55
(WhiB)

Empress_56

Empress_57
(WhiB)

Empress_58
(HTH DNA binding protein)

Empress_59

Empress_60

Empress_61

Empress_62
(Rec A)

Empress_63

Empress_64
(HNH endonuclease)

Empress_65

Empress_66

Empress_67

Empress_68
(DNA Methylase)

Empress_69

Empress_70

Empress_71

Empress_72
(DNA Methylase)

Empress_73

Empress_74

Empress_75

Empress_76

Empress_77

Empress_78

Empress_79

Empress_80

Empress_81

Empress_82

Empress_83

Empress_84

Empress_85

Empress_86

Empress_87

Empress_88

Empress_89

Empress_90

Empress_91

Empress_92

Empress_93

Empress_94
(HTH DNA-binding protein)

Empress_95

Empress_96

Empress_97

Empress_98

Empress_99

Empress_100

Empress_101
(Galactosyltransferase)

Empress_102

Empress_103
(Hypothetitcal Protein)

Empress_104
(N-acetylglucosaminyl transferace)

Publication Info
Uploaded to GenBank?Yes
GenBank AccessionKY012363
Refseq NumberNone yet
Published in PaperPope, Bowman, Russell, et al 2015, eLIFE
Available Files
EM PictureDownload
Final DNAMaster FileDownload
GenBank File for PhameratorDownload