Mycobacterium phage CaptainTrips
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Detailed Information for Phage CaptainTrips
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByEmily Powell
Year Found2012
Location FoundWoodville, AL USA
Finding InstitutionJacksonville State University
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS Coordinates34.573975 N, 86.221176 W Map
Discovery NotesSample was collected at Cathedral Caverns State Park, located in northern Marshall County, AL. The sample was taken from the top bank of Mystery River, which flows through the cave.
Sample collection depth: 2 cm
Collection date: September 1, 2012
Air temperature at collection: 15.6 degrees C.
Approximate moisture content: Saturated/extremely moist
Naming NotesCaptainTrips is named in honor of the man-made superflu (influenza) virus featured in Stephen King's book "The Stand". Captain Trips is accidentally released from a military facility, and subsequently kills over 99% of the global population.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 10, 2013
Sequencing FacilityVirginia Commonwealth University Nucleic Acids Research Facilities
Shotgun Sequencing Method454 Pyrosequencing
Approximate Shotgun Coverage320
Genome length (bp)57328
Character of genome ends3' Sticky Overhang
Overhang Length10 bases
Overhang SequenceCGGAAGGCGC
GC Content61.5%
Fasta file available?Yes: Download fasta file
Characterization
ClusterF
SubclusterF1
Other Cluster Members

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AbbyNormal (None)

Grib (None)

Kishmeesh (None)

KitCat (None)

MightyMorph (None)

Puck (None)

Renaud18 (None)

WIVsmall1220 (None)

Alexphander (F1)

Anaxagorus (F1)

Ant1Dodson (F1)

ArcusAngelus (F1)

Ardmore (F1)

Arienne (F1)

Asmart (F1)

Awesomesauce (F1)

Barson (F1)

Batiatus (F1)

BigPhil (F1)

Bipolar (F1)

BobaPhett (F1)

Bobi (F1)

Boomer (F1)

Braemar (F1)

Brocalys (F1)

Bubbles123 (F1)

BuzzLyseyear (F1)

Byougenkin (F1)

Cabrinians (F1)

Cakepop (F1)

CaptainTrips (F1)

Cerasum (F1)

Che8 (F1)

Chhibber (F1)

Chikondi (F1)

Chuckly (F1)

Clover (F1)

CoolGuy (F1)

Cornucopia (F1)

Daenerys (F1)

Danda (F1)

Dante (F1)

DaWorst (F1)

DCrust15 (F1)

DeadP (F1)

Desmond (F1)

DillTech15 (F1)

DirtMcgirt (F1)

DLane (F1)

Docouto (F1)

Dorothy (F1)

DotProduct (F1)

Drago (F1)

DRBy19 (F1)

EleanorGeorge (F1)

Emma (F1)

Empress (F1)

Estave1 (F1)

Estella (F1)

Filuzino (F1)

Firehouse51 (F1)

Flathead (F1)

Florinda (F1)

Frankie (F1)

Fruitloop (F1)

FunOne (F1)

Galactic (F1)

Gardregs (F1)

Gendisarray (F1)

Genesis (F1)

Geralt (F1)

Girafales (F1)

Girr (F1)

GUmbie (F1)

Hades (F1)

Hamulus (F1)

Harley (F1)

Hegedechwinu (F1)

Ibhubesi (F1)

Inventum (F1)

IrishSherpFalk (F1)

James (F1)

Job42 (F1)

Judylove (F1)

Kalikimaka (F1)

Kersh (F1)

Kimberlium (F1)

KingMidas (F1)

Kingsley (F1)

Koella (F1)

Krakatau (F1)

KristaRAM (F1)

LillyLatzon (F1)

Llama (F1)

Llij (F1)

Lysinator (F1)

MacDrage (F1)

Mahavrat (F1)

Mantra (F1)

Mattes (F1)

McDiddy (F1)

Melissauren88 (F1)

MilleniumForce (F1)

MinionDave (F1)

Minnie (F1)

Misha28 (F1)

MisterCuddles (F1)

Mozy (F1)

Mutaforma13 (F1)

Nemain (F1)

Nitzel (F1)

Noodle (F1)

OfUltron (F1)

Ogopogo (F1)

OldBen (F1)

OlympiaSaint (F1)

Ovechkin (F1)

OwlsT2W (F1)

Pacc40 (F1)

Peanut21s (F1)

Phabio (F1)

Phasih (F1)

Phatniss (F1)

PhrankthaTank (F1)

Piper2020 (F1)

Pippy (F1)

Plackberry (F1)

Plumbus (F1)

PMC (F1)

Polka14 (F1)

PopTart (F1)

Priscilla (F1)

Prometheus (F1)

Quico (F1)

Ramsey (F1)

RitaG (F1)

Rocktrap (F1)

RockyHorror (F1)

Rombolo (F1)

Royals2015 (F1)

Ruby (F1)

S2Kari (F1)

S2TSquared (F1)

Saal (F1)

SaltyMike (F1)

SassyB (F1)

Scottish (F1)

Seagreen (F1)

SG4 (F1)

Sharpshooter (F1)

Shauna1 (F1)

SherL (F1)

ShiLan (F1)

SimranZ1 (F1)

SiSi (F1)

Sparkdehlily (F1)

Spartacus (F1)

Spikelee (F1)

Spoonbill (F1)

SuperGrey (F1)

SwagPigglett (F1)

Taj (F1)

TDanisky (F1)

TootsiePop (F1)

Tweety (F1)

UncleRicky (F1)

Velveteen (F1)

Wachhund (F1)

Wee (F1)

WheatBerry18 (F1)

Whouxphf (F1)

WillSterrel (F1)

WIVsmall (F1)

XFactor (F1)

Zerg (F1)

Avani (F2)

Che9d (F2)

Demsculpinboyz (F2)

Jabbawokkie (F2)

Yoshi (F2)

Zapner (F2)

Squirty (F3)

TChen (F4)

Cornie (F5)

MorphotypeSiphoviridae
Final annotation complete?No
Has been Phamerated?Yes
Gene List

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CaptainTrips_1

CaptainTrips_2
(Terminase, small subunit)

CaptainTrips_3
(Terminase, large subunit)

CaptainTrips_4
(Portal)

CaptainTrips_5
(capsid maturation protease)

CaptainTrips_6
(scaffolding)

CaptainTrips_7
(major capsid protein)

CaptainTrips_8
(head-to-tail connector)

CaptainTrips_9
(head-to-tail connector)

CaptainTrips_10
(head-to-tail connector)

CaptainTrips_11
(head-to-tail connector)

CaptainTrips_12
(major tail subunit)

CaptainTrips_13
(Tail assembly chaperone)

CaptainTrips_14
(Tail assembly chaperone)

CaptainTrips_15
(Tapemeasure)

CaptainTrips_16
(minor tail protein)

CaptainTrips_17
(minor tail protein)

CaptainTrips_18
(minor tail protein)

CaptainTrips_19
(minor tail protein)

CaptainTrips_20
(minor tail protein, D-ala-D-ala carboxypeptidase)

CaptainTrips_21
(minor tail protein)

CaptainTrips_22

CaptainTrips_23

CaptainTrips_24

CaptainTrips_25

CaptainTrips_26

CaptainTrips_27

CaptainTrips_28

CaptainTrips_29

CaptainTrips_30

CaptainTrips_31
(Lysin A)

CaptainTrips_32
(Lysin B)

CaptainTrips_33
(Holin)

CaptainTrips_34

CaptainTrips_35

CaptainTrips_36
(DnaQ-like nuclease)

CaptainTrips_37

CaptainTrips_38

CaptainTrips_39

CaptainTrips_40

CaptainTrips_41
(Integrase (Y-int))

CaptainTrips_42

CaptainTrips_43
(Immunity repressor)

CaptainTrips_44
(CRO)

CaptainTrips_45

CaptainTrips_46

CaptainTrips_47

CaptainTrips_48

CaptainTrips_49

CaptainTrips_50

CaptainTrips_51

CaptainTrips_52

CaptainTrips_53

CaptainTrips_54
(WhiB)

CaptainTrips_55

CaptainTrips_56
(WhiB)

CaptainTrips_57
(HTH DNA binding domain)

CaptainTrips_58

CaptainTrips_59

CaptainTrips_60

CaptainTrips_61

CaptainTrips_62
(RecA)

CaptainTrips_63
(HNH endonuclease)

CaptainTrips_64
(Helicase)

CaptainTrips_65
(DNA Methylase)

CaptainTrips_66

CaptainTrips_67

CaptainTrips_68

CaptainTrips_69

CaptainTrips_70

CaptainTrips_71

CaptainTrips_72

CaptainTrips_73

CaptainTrips_74

CaptainTrips_75

CaptainTrips_76

CaptainTrips_77

CaptainTrips_78

CaptainTrips_79

CaptainTrips_80

CaptainTrips_81

CaptainTrips_82

CaptainTrips_83

CaptainTrips_84

CaptainTrips_85

CaptainTrips_86

CaptainTrips_87

CaptainTrips_88

CaptainTrips_89

CaptainTrips_90

CaptainTrips_91

CaptainTrips_92

CaptainTrips_93

CaptainTrips_94

CaptainTrips_95

CaptainTrips_96

CaptainTrips_97

CaptainTrips_98

CaptainTrips_99

CaptainTrips_100

CaptainTrips_101

CaptainTrips_102

CaptainTrips_103
(Glycosyltransferase)

CaptainTrips_104
(Ser/thr kinase)

CaptainTrips_105

CaptainTrips_106
(Glycosyltransferase)

CaptainTrips_107
(HNH endonuclease.)

Submitted Annotation in DNA Master FormatDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionKM652553
Refseq NumberNone yet
Published in PaperPope, Bowman, Russell, et al 2015, eLIFE
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
EM PictureDownload