Detailed Information for Phage Alvin |
Discovery Information |
Isolation Host | Mycobacterium smegmatis mc²155 |
Found By | Brittany Dey |
Year Found | 2014 |
Location Found | Pittsburgh, PA USA |
Finding Institution | University of Pittsburgh |
Program | Phage Hunters Integrating Research and Education |
From enriched soil sample? | Yes |
Isolation Temperature | Not entered |
GPS Coordinates | 40.447047 N, 79.956118 W Map |
Sequencing Information |
Sequencing Complete? | Yes |
Date Sequencing Completed | May 27, 2014 |
Sequencing Facility | Pittsburgh Bacteriophage Institute |
Shotgun Sequencing Method | Ion Torrent Sequencing |
Approximate Shotgun Coverage | 532 |
Sanger Finishing Reactions | 6 |
Genome length (bp) | 49577 |
Character of genome ends | 3' Sticky Overhang |
Overhang Length | 10 bases |
Overhang Sequence | CGGATGGTAA |
GC Content | 63.5% |
Fasta file available? | Yes: Download fasta file |
Characterization |
Cluster | A |
Subcluster | A1 |
Cluster Life Cycle | Temperate |
Other Cluster Members |
|
Annotating Institution | Unknown or unassigned |
Annotation Status | In GenBank |
Plaque Notes | Makes plaques that are 3-3.5mm in size. Plaques have a turbid halo on the edges and a clear bulls-eye center. |
Morphotype | Siphoviridae |
Number of Genes | 86 |
Has been Phamerated? | Yes |
Gene List |
|
Publication Info |
Uploaded to GenBank? | Yes |
GenBank Accession | KP027205 |
Refseq Number | NC_026583 |
Archiving Info |
Archiving status |
Archived |
Pitt Freezer Box# |
4 |
Pitt Freezer Box Grid# |
D12 |
Available Files |
EM Picture | Download |
Final DNAMaster File | Download |