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Mycobacterium phage HermioneGrange

BLAST and GeneMark available upon entering GPS coordinates

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Detailed Information for Phage HermioneGrange
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Former namesTetraOeuf
Found ByEleanor Stewart-Jones
Year Found2016
Location FoundLawrence, KS USA
Finding InstitutionUniversity of Kansas
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS CoordinatesUnavailable
Discovery NotesMuddy soil, near a drain
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 5, 2017
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage1823
Genome length (bp)53147
Character of genome ends3' Sticky Overhang
Overhang Length10 bases
Overhang SequenceCGGATGGTAA
GC Content63.6%
Fasta file available?Available upon entering GPS coordinates
Characterization
ClusterA
SubclusterA1
Cluster Life CycleTemperate
Other Cluster Members

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Francis47 (A1)

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Fushigi (A1)

GageAP (A1)

Gompeii16 (A1)

Graduation (A1)

Greg (A1)

HanShotFirst (A1)

HarryOW (A1)

HermioneGrange (A1)

Homines (A1)

Hope4ever (A1)

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ILeeKay (A1)

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JC27 (A1)

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TheloniousMonk (A1)

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Traft412 (A1)

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Chupacabra (A10)

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Anthony (A20)

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ToneTone (A6)

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WunderPhul (A6)

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Zaka (A6)

Zulu (A6)

HINdeR (A7)

Sheen (A7)

Timshel (A7)

Astro (A8)

Danforth (A8)

Dixon (A8)

Expelliarmus (A8)

NearlyHeadless (A8)

Roary (A8)

Saintus (A8)

Smeadley (A8)

Stephig9 (A8)

Aliter (A9)

Alma (A9)

Arissanae (A9)

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BogosyJay (A9)

Catalina (A9)

Charm (A9)

Conquerage (A9)

DreamTeam1 (A9)

Eidsmoe (A9)

Elephantoon (A9)

ExplosioNervosa (A9)

HortumSL17 (A9)

Keziacharles14 (A9)

LoneWolf (A9)

Maminiaina (A9)

Myxus (A9)

PackMan (A9)

Phaeder (A9)

Phonnegut (A9)

Pioneer (A9)

Priya (A9)

Qobbit (A9)

Rahalelujah (A9)

Scherzo (A9)

SheaKeira (A9)

Toaka (A9)

Tubs (A9)

Ugenie5 (A9)

Vanisoa (A9)

Yecey3 (A9)

Annotating InstitutionUniversity of Kansas
Annotation StatusIn GenBank
Plaque Notes8mm diameter bullseye plaques. Center is clear with 3-4 cloudy rings
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

Click to View

HermioneGrange_1

HermioneGrange_2
(HNH endonuclease)

HermioneGrange_3
(terminase small subunit)

HermioneGrange_4

HermioneGrange_6

HermioneGrange_7

HermioneGrange_8

HermioneGrange_9

HermioneGrange_10
(lysin A)

HermioneGrange_11
(lysin B)

HermioneGrange_12
(terminase large subunit)

HermioneGrange_13
(portal protein)

HermioneGrange_14
(scaffolding protein)

HermioneGrange_15
(major capsid protein)

HermioneGrange_16

HermioneGrange_17
(head-to-tail adaptor)

HermioneGrange_18
(head-to-tail adaptor)

HermioneGrange_19

HermioneGrange_20
(head-to-tail adaptor)

HermioneGrange_21
(major tail protein)

HermioneGrange_22
(tail assembly chaperone)

HermioneGrange_23
(tail assembly chaperone)

HermioneGrange_24
(tape measure protein)

HermioneGrange_25
(minor tail protein)

HermioneGrange_26
(minor tail protein)

HermioneGrange_27
(minor tail protein)

HermioneGrange_28
(minor tail protein)

HermioneGrange_29
(minor tail protein)

HermioneGrange_30

HermioneGrange_31
(minor tail protein)

HermioneGrange_32
(minor tail protein)

HermioneGrange_33

HermioneGrange_34

HermioneGrange_35

HermioneGrange_36

HermioneGrange_37
(integrase)

HermioneGrange_38

HermioneGrange_39

HermioneGrange_40

HermioneGrange_41

HermioneGrange_42

HermioneGrange_43

HermioneGrange_44
(DNA polymerase I)

HermioneGrange_45

HermioneGrange_46

HermioneGrange_47

HermioneGrange_48

HermioneGrange_49

HermioneGrange_50

HermioneGrange_51
(recombination directionality factor)

HermioneGrange_52

HermioneGrange_53

HermioneGrange_54

HermioneGrange_55
(DNA primase)

HermioneGrange_56
(DNA primase)

HermioneGrange_57

HermioneGrange_58

HermioneGrange_59

HermioneGrange_60
(DNA methylase)

HermioneGrange_61
(endonuclease VII)

HermioneGrange_62

HermioneGrange_63

HermioneGrange_64
(NrdH-like glutaredoxin)

HermioneGrange_65
(DnaB-like dsDNA helicase)

HermioneGrange_66

HermioneGrange_67

HermioneGrange_68

HermioneGrange_69

HermioneGrange_70
(helix-turn-helix DNA binding domain protein)

HermioneGrange_71
(RecB-like exonuclease/helicase)

HermioneGrange_72

HermioneGrange_73

HermioneGrange_74

HermioneGrange_75

HermioneGrange_76

HermioneGrange_77

HermioneGrange_78

HermioneGrange_79

HermioneGrange_80

HermioneGrange_81

HermioneGrange_82

HermioneGrange_83

HermioneGrange_84

HermioneGrange_85

HermioneGrange_86

HermioneGrange_87

HermioneGrange_88

HermioneGrange_89

HermioneGrange_90

HermioneGrange_91

HermioneGrange_92

HermioneGrange_93

HermioneGrange_94

HermioneGrange_95

HermioneGrange_96

HermioneGrange_97

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMK820638
Refseq NumberNone yet
Archiving Info
Archiving status Archived
SEA Lysate Titer 4x10^9
Date of SEA Lysate Titering Oct 8, 2016
Pitt Freezer Box# 42
Pitt Freezer Box Grid# A3
Available Files
GenBank File for PhameratorDownload