| Detailed Information for Phage Atkinbua |
| Discovery Information |
| Isolation Host | Mycobacterium smegmatis mc²155 |
| Found By | Daron Atkin |
| Year Found | 2010 |
| Location Found | Orem, UT USA |
| Finding Institution | Brigham Young University |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | Yes |
| Isolation Temperature | Not entered |
| GPS Coordinates | 40.325994 N, 111.735727 W Map |
| Discovery Notes | Found in a strawberry patch in a greenhouse. Warm temperature.
30 feet to the right of the main entrance. I scraped the soil around the edge of the strawberry patch. The soil itself was very moist and had been watered regularly. |
| Sequencing Information |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Jul 31, 2014 |
| Sequencing Facility | BYU DNA Sequencing Center |
| Shotgun Sequencing Method | 454 Pyrosequencing |
| Approximate Shotgun Coverage | 90 |
| Genome length (bp) | 52955 |
| Character of genome ends | 3' Sticky Overhang |
| Overhang Length | 10 bases |
| Overhang Sequence | CGGATGGTAA |
| GC Content | 63.3% |
| Fasta file available? | Yes: Download fasta file |
| Characterization |
| Cluster | A |
| Subcluster | A1 |
| Cluster Life Cycle | Temperate |
| Other Cluster Members |
|
| Annotating Institution | University of Pittsburgh |
| Annotation Status | In GenBank |
| Plaque Notes | The size of bacteria cleared by this plaque was very large and clear. Each time that I did the dilutions the same results came out. The time it took the plaque to clear the bacteria was usually 24 hours. |
| Morphotype | Siphoviridae |
| Has been Phamerated? | Yes |
| Gene List |
|
| Submitted Minimal DNA Master File | Download |
| Publication Info |
| Uploaded to GenBank? | Yes |
| GenBank Accession | MN813700 |
| Refseq Number | None yet |
| Archiving Info |
| Archiving status |
Archived |
| SEA Designator |
2010BRYOatkinbuaDHA |
| Pitt Freezer Box# |
11 |
| Pitt Freezer Box Grid# |
60 |
| Available Files |
| Plaque Picture | Download |
| EM Picture | Download |
| GenBank File for Phamerator | Download |
