Detailed Information for Phage Dublin |
Discovery Information |
Isolation Host | Mycobacterium smegmatis mc²155 |
Found By | Madeline McAllister |
Year Found | 2015 |
Location Found | Longview, TX USA |
Finding Institution | LeTourneau University |
Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
From enriched soil sample? | Yes |
Isolation Temperature | 25°C |
GPS Coordinates | 32.468735 N, 94.724825 W Map |
Discovery Notes | The soil sample in which this phage was isolated from was found in a flower bed, under some mulch and by a sprinkler head. |
Naming Notes | I named this phage Dublin to represent my Irish heritage. Half of my family still lives in the city of Dublin and I have many fond memories from when I have visited this city. |
Sequencing Information |
Sequencing Complete? | Yes |
Date Sequencing Completed | Feb 4, 2016 |
Sequencing Facility | Pittsburgh Bacteriophage Institute |
Shotgun Sequencing Method | Illumina Sequencing |
Approximate Shotgun Coverage | 3739 |
Genome length (bp) | 50280 |
Character of genome ends | 3' Sticky Overhang |
Overhang Length | 10 bases |
Overhang Sequence | CGGGAGGTAA |
GC Content | 60.9% |
Fasta file available? | Yes: Download fasta file |
Characterization |
Cluster | A |
Subcluster | A5 |
Cluster Life Cycle | Temperate |
Other Cluster Members |
|
Annotating Institution | LeTourneau University |
Annotation Status | In GenBank |
Plaque Notes | The plaques are clear in the center with a faint translucent halo around them. |
Morphotype | Siphoviridae |
Has been Phamerated? | Yes |
Gene List |
|
Submitted Annotation in DNA Master Format | Download |
Submitted Minimal DNA Master File | Download |
Author List | Download |
Annotation Cover Sheet | Download |
Publication Info |
Uploaded to GenBank? | Yes |
GenBank Accession | MH338235 |
Refseq Number | None yet |
Archiving Info |
Archiving status |
Archived |
Pitt Freezer Box# |
21 |
Pitt Freezer Box Grid# |
E11 |
Available Files |
Plaque Picture | Download |
EM Picture | Download |
GenBank File for Phamerator | Download |