Mycobacterium phage Koko
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Detailed Information for Phage Koko
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByCole Pierce
Year Found2014
Location FoundLos Angeles, CA USA
Finding InstitutionUniversity of California, Los Angeles
ProgramUnavailable
From enriched soil sample?Yes
Isolation Temperature35°C
GPS Coordinates34.06 N, 118.45 W Map
Discovery NotesKoko was isolated from a sample taken on October 8th, 2014 at a depth of 2.8 cm from beneath a palm tree off of a cement footpath in Los Angeles, CA. collected on October 8th, 2014. Isolation, characterization and annotation of Koko was done by Teams Sirius Plaque (Michelle Chen, Alyssa Kallman, Krystal Ramos, Josh Martin) and 50 Shades of Phage (Catherine Luo, Teri Nguyen, Cole Pierce, Emily Smith). TA: Olivia Ellis. Instructor: Giorgia Pirino. Laboratory Support: Krisanavane Reddi
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedFeb 16, 2015
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage11617
Genome length (bp)52879
Character of genome ends3' Sticky Overhang
Overhang Length10 bases
Overhang SequenceCGGTCGGTTA
GC Content61.3%
Fasta file available?Yes: Download fasta file
Characterization
ClusterA
SubclusterA6
Cluster Life CycleTemperate
Other Cluster Members

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Chargerpower (None)

Abbyshoes (A1)

Abrogate (A1)

Acme (A1)

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Aeneas (A1)

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Chupacabra (A10)

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OKCentral2016 (A10)

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DarthPhader (A12)

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Steamy (A12)

Zimmer (A12)

Phlei (A13)

Gail (A14)

Jeeves (A14)

Luchador (A14)

SororFago (A14)

Anaysia (A15)

Anon (A15)

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Boohoo (A15)

DekHockey33 (A15)

Epsocamisio (A15)

JSwag (A15)

KatherineG (A15)

LastResort (A15)

Looper (A15)

MinecraftSteve (A15)

Nebulosus (A15)

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Oofda (A15)

ReMo (A15)

Remus (A15)

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ShayRa (A15)

Soups (A15)

Strosahl (A15)

Switzerland (A15)

Waits (A15)

EagleEye (A16)

Lucyedi (A16)

PainterBoy (A16)

40AC (A17)

MyraDee (A18)

Kimona (A19)

20ES (A2)

AbbyPaige (A2)

Acolyte (A2)

Adzzy (A2)

Agape74 (A2)

AN3 (A2)

AN9 (A2)

ANI8 (A2)

AnnaL29 (A2)

Anselm (A2)

ArcherNM (A2)

BabyBack (A2)

Bactobuster (A2)

Baehexic (A2)

BengiVuitton (A2)

Benvolio (A2)

BiancaTri92 (A2)

BobSwaget (A2)

Bugsy (A2)

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Che12 (A2)

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Colin (A2)

CRB1 (A2)

Crucio (A2)

D29 (A2)

D32 (A2)

Dalmatian (A2)

DBQu4n (A2)

Deloris (A2)

Dignity (A2)

Drake55 (A2)

DudeLittle (A2)

Duplo (A2)

Echild (A2)

Equemioh13 (A2)

EvilGenius (A2)

EZMoney23 (A2)

Fameo (A2)

FiringLine (A2)

First (A2)

Flare16 (A2)

GaugeLDP (A2)

Georgie2 (A2)

HarryHoudini (A2)

Heffalump (A2)

Herbertwm (A2)

IronMan (A2)

Iwokeuplikedis (A2)

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JoshKayV (A2)

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Naji (A2)

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Piro94 (A2)

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Retro23 (A2)

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Fred313 (A3)

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LarryKay (A3)

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MK4 (A3)

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OlanP (A3)

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P28Green (A3)

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SoYo (A3)

Spike509 (A3)

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TiroTheta9 (A4)

TroyPia (A4)

TygerBlood (A4)

Ulysses (A4)

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Wile (A4)

Wizard007 (A4)

Xena (A4)

YoSam321 (A4)

AgentM (A5)

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Archetta (A5)

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HuhtaEnerson15 (A5)

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Lev2 (A5)

LittleCherry (A5)

MarysWell (A5)

Micasa (A5)

Midas2 (A5)

Milcery (A5)

Naca (A5)

PetterN (A5)

Phlorence (A5)

PickleBack (A5)

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Swirley (A5)

SydNat (A5)

Tarynearal (A5)

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Artemis2UCLA (A6)

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Blue7 (A6)

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CloudWang3 (A6)

Cookiedough (A6)

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EricB (A6)

Garak (A6)

Gladiator (A6)

GreedyLawyer (A6)

Gruunaga (A6)

Hammer (A6)

Helmet (A6)

Hexamo (A6)

Hoot (A6)

Indra (A6)

Isiphiwo (A6)

Jeffabunny (A6)

JewelBug (A6)

Jordennis (A6)

Kazan (A6)

Kipper29 (A6)

Koko (A6)

Lilbunny (A6)

McFly (A6)

Neeharika16 (A6)

Newrala (A6)

Pmask (A6)

Priamo (A6)

Rifter (A6)

Roksolana (A6)

SmellyB (A6)

SuperAwesome (A6)

SuperCallie99 (A6)

ToneTone (A6)

Tucker (A6)

VohminGhazi (A6)

Wiks (A6)

WunderPhul (A6)

Yokurt (A6)

Zaka (A6)

Zulu (A6)

DroogsArmy (A7)

HINdeR (A7)

Sheen (A7)

Timshel (A7)

Astro (A8)

Danforth (A8)

Dixon (A8)

Expelliarmus (A8)

Groundhog (A8)

NearlyHeadless (A8)

Phillis (A8)

Roary (A8)

Saintus (A8)

Smeadley (A8)

Stephig9 (A8)

Aliter (A9)

Alma (A9)

Arissanae (A9)

Beemo (A9)

BogosyJay (A9)

Catalina (A9)

Charm (A9)

Conquerage (A9)

Darrell (A9)

DreamTeam1 (A9)

Eidsmoe (A9)

Elephantoon (A9)

EmyBug (A9)

ExplosioNervosa (A9)

Fayely (A9)

HortumSL17 (A9)

Keziacharles14 (A9)

LoneWolf (A9)

Maminiaina (A9)

Myxus (A9)

PackMan (A9)

Phaeder (A9)

Phonnegut (A9)

Pioneer (A9)

Priya (A9)

Qobbit (A9)

Rahalelujah (A9)

Scherzo (A9)

SheaKeira (A9)

Spouty (A9)

Toaka (A9)

Tubs (A9)

Ugenie5 (A9)

Vanisoa (A9)

Yecey3 (A9)

Annotating InstitutionUnknown or unassigned
Annotation StatusIn GenBank
Plaque NotesClear center outlined by a turbid halo. Uniform plaque morphology. Average diameter of 6 mm, with a typical range of 4 mm-10 mm. Diameters as narrow as 3 mm, and as wide as 12 mm, were observed in standard conditions.
MorphotypeSiphoviridae
Number of Genes102
Number of tRNAs3
Has been Phamerated?Yes
Gene List

Click to View

Koko_1

Koko_2
(metalloprotease)

Koko_3

Koko_4
(HNH endonuclease)

Koko_5
(terminase small subunit)

Koko_6

Koko_7
(minor tail protein)

Koko_8

Koko_12

Koko_13
(lysin A)

Koko_14
(holin)

Koko_15
(terminase large subunit)

Koko_16
(portal protein)

Koko_17
(capsid maturation protease)

Koko_18
(scaffolding protein)

Koko_19
(major capsid protein)

Koko_20

Koko_21
(head-to-tail adaptor)

Koko_22
(head-to-tail connector protein)

Koko_23
(head-to-tail stopper)

Koko_24
(head-to-tail connector protein)

Koko_25
(tail terminator)

Koko_26
(major tail protein)

Koko_27
(tail assembly chaperone)

Koko_28
(tail assembly chaperone)

Koko_29
(tape measure protein)

Koko_30
(minor tail protein)

Koko_31
(minor tail protein)

Koko_32

Koko_33
(minor tail protein)

Koko_34
(minor tail protein)

Koko_35

Koko_36

Koko_37
(ParA-like dsDNA partitioning protein)

Koko_38
(ParB-like dsDNA partitioning protein)

Koko_39

Koko_40
(deoxycytidylate deaminase)

Koko_41

Koko_42

Koko_43

Koko_44

Koko_45

Koko_46

Koko_47
(DNA polymerase I)

Koko_48

Koko_49

Koko_50
(helix-turn-helix DNA binding domain protein)

Koko_51

Koko_52
(ThyX-like thymidylate synthase)

Koko_53

Koko_54
(HNH endonuclease)

Koko_55
(ribonucleotide reductase)

Koko_56

Koko_57

Koko_58
(DNA binding protein)

Koko_59
(metallophosphoesterase)

Koko_60

Koko_61

Koko_62
(DNA primase)

Koko_63
(DNA primase)

Koko_64
(endonuclease VII)

Koko_65

Koko_66
(endonuclease VII)

Koko_67

Koko_68

Koko_69

Koko_70

Koko_71

Koko_72

Koko_73
(DnaB-like dsDNA helicase)

Koko_74

Koko_75

Koko_76

Koko_77
(Cas4 exonuclease)

Koko_78

Koko_79
(immunity repressor)

Koko_80

Koko_81

Koko_82

Koko_83

Koko_84

Koko_85

Koko_86

Koko_87
(protease)

Koko_88

Koko_89

Koko_90

Koko_91
(DNA methylase)

Koko_92
(DNA methylase)

Koko_93
(ParB-like nuclease domain protein)

Koko_94

Koko_95

Koko_96

Koko_97

Koko_98

Koko_99

Koko_100

Koko_101

Koko_102

Koko_103

Koko_104

Koko_105

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMG099945
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 23
Pitt Freezer Box Grid# D7
Available Files
Plaque PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload