Detailed Information for Phage McFly |
Discovery Information |
Isolation Host | Mycobacterium smegmatis mc²155 |
Found By | Seth Ayres |
Year Found | 2012 |
Location Found | Hampden-Sydney, VA USA |
Finding Institution | Hampden-Sydney College |
Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
From enriched soil sample? | Yes |
Isolation Temperature | Not entered |
GPS Coordinates | 37.240169 N, 78.460983 W Map |
Discovery Notes | The soil sample that this phage was isolated from was collected from a depth of approximately 2.5 centimeters. The soil was collected from underneath of a hedgerow behind the Venable Hall dormitory on the Hampden-Sydney College campus. |
Naming Notes | This phage is named after the main character in the "Back to the Future" film series. |
Sequencing Information |
Sequencing Complete? | Yes |
Date Sequencing Completed | Jan 13, 2013 |
Sequencing Facility | Pittsburgh Bacteriophage Institute |
Shotgun Sequencing Method | Ion Torrent Sequencing |
Approximate Shotgun Coverage | 800 |
Genome length (bp) | 52502 |
Character of genome ends | 3' Sticky Overhang |
Overhang Length | 10 bases |
Overhang Sequence | CGGTCGGTTA |
GC Content | 61.5% |
Fasta file available? | Yes: Download fasta file |
Characterization |
Cluster | A |
Subcluster | A6 |
Cluster Life Cycle | Temperate |
Other Cluster Members |
|
Annotating Institution | Unknown or unassigned |
Annotation Status | In GenBank |
Morphotype | Siphoviridae |
Has been Phamerated? | Yes |
Gene List |
|
Submitted Annotation in DNA Master Format | Download |
Author List | Download |
Annotation Cover Sheet | Download |
Publication Info |
Uploaded to GenBank? | Yes |
GenBank Accession | KU695582 |
Refseq Number | None yet |
Published in Paper | Pope, Bowman, Russell, et al 2015, eLIFE: Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity |
Archiving Info |
Archiving status |
Archived |
Pitt Freezer Box# |
36 |
Pitt Freezer Box Grid# |
28 |
Available Files |
Restriction Digest Picture | Download |
EM Picture | Download |
Final DNAMaster File | Download |