Recently Added Phages

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Recently Modified Phages

Sappho Aziraphale Humphry Humphrey7 Hooper

Recently Finished Phages

Roney (DJ) Sephiroth (DU) Gole (None) Hlubikazi (F1) Mova (F1)
Mycobacterium phage Danforth
Know something about this phage that we don't? Modify its data.
Detailed Information for Phage Danforth
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByGregory Harrison
Year Found2012
Location FoundSt. Louis, MO USA
Finding InstitutionWashington University in St. Louis
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS Coordinates38.644542 N, 90.315412 W Map
Naming NotesIsolated from the lawn in front of the Danforth House on the Washington University in St. Louis campus.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedSep 18, 2019
Sequencing FacilityThe McDonnell Genome Institute at Washington University
Shotgun Sequencing Method454 Pyrosequencing
Approximate Shotgun Coverage126
Sanger Finishing Reactions17
Genome length (bp)52651
Character of genome ends3' Sticky Overhang
Overhang Length10 bases
Overhang SequenceCGGGATGTAA
GC Content61.3%
Fasta file available?Yes: Download fasta file
Characterization
ClusterA
SubclusterA8
Cluster Life CycleTemperate
Other Cluster Members

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Francis47 (A1)

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Gompeii16 (A1)

Graduation (A1)

Greg (A1)

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MPlant7149 (A1)

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Sibs6 (A1)

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Snazzy (A1)

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SpikeBT (A1)

Squee (A1)

StrongArm (A1)

Sumter (A1)

SwissCheese (A1)

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Target (A1)

Tasp14 (A1)

TheloniousMonk (A1)

Thor (A1)

Topgun (A1)

Traft412 (A1)

Treddle (A1)

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Trouble (A1)

Turj99 (A1)

U2 (A1)

Violet (A1)

Watermelon (A1)

Wheeler (A1)

Wilkins (A1)

Zeeculate (A1)

Zephyr (A1)

Zeuska (A1)

Chupacabra (A10)

Drake94 (A10)

Goose (A10)

KittenMittens (A10)

Kristoff (A10)

OKCentral2016 (A10)

Rebeuca (A10)

RhynO (A10)

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Topanga (A10)

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WalterMcMickey (A10)

Aneem (A11)

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Bowtie (A11)

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Ebony (A11)

Et2Brutus (A11)

Fibonacci (A11)

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Hutc2 (A11)

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Joselito (A11)

Lucivia (A11)

Mabel (A11)

Mulciber (A11)

Munch (A11)

Orange (A11)

Salz (A11)

Snape (A11)

DarthPhader (A12)

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Refuge (A12)

Steamy (A12)

Phlei (A13)

Gail (A14)

Jeeves (A14)

Luchador (A14)

Anon (A15)

Epsocamisio (A15)

JSwag (A15)

KatherineG (A15)

LastResort (A15)

MinecraftSteve (A15)

Nedarya (A15)

ReMo (A15)

Remus (A15)

Rosalind (A15)

ShayRa (A15)

Soups (A15)

Strosahl (A15)

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EagleEye (A16)

Lucyedi (A16)

PainterBoy (A16)

40AC (A17)

MyraDee (A18)

Kimona (A19)

20ES (A2)

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AN3 (A2)

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ANI8 (A2)

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CRB1 (A2)

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D29 (A2)

D32 (A2)

Dalmatian (A2)

DBQu4n (A2)

Drake55 (A2)

DudeLittle (A2)

Echild (A2)

Equemioh13 (A2)

EvilGenius (A2)

Fameo (A2)

FiringLine (A2)

First (A2)

Flare16 (A2)

GaugeLDP (A2)

Georgie2 (A2)

Heffalump (A2)

Herbertwm (A2)

IronMan (A2)

Iwokeuplikedis (A2)

Jaan (A2)

Jerm (A2)

JoshKayV (A2)

Journey13 (A2)

Jsquared (A2)

Kalpine (A2)

Kerberos (A2)

KingCyrus (A2)

L5 (A2)

LadyBird (A2)

Larenn (A2)

Leogania (A2)

LilTurb (A2)

Lokk (A2)

Loser (A2)

Malec (A2)

Miko (A2)

MissWhite (A2)

Naji (A2)

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NicoleTera (A2)

NothingSpecial (A2)

Odin (A2)

Ph8s (A2)

Phaded (A2)

Piro94 (A2)

Pomar16 (A2)

Power (A2)

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Rachaly (A2)

RedRock (A2)

Retro23 (A2)

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StarStuff (A2)

Superchunk (A2)

SweetiePie (A2)

TipsytheTRex (A2)

Tomathan (A2)

Trixie (A2)

Turbido (A2)

Updawg (A2)

VA6 (A2)

VC3 (A2)

Whabigail7 (A2)

WideWale (A2)

XianYue (A2)

Anthony (A20)

ACFishhook (A3)

Aglet (A3)

AgronaGT15 (A3)

Anubis (A3)

AugsMagnumOpus (A3)

BabyRay (A3)

Beauxregard13 (A3)

BreSam8 (A3)

BuzzBuzz (A3)

Bxz2 (A3)

Caviar (A3)

DaHudson (A3)

Daishi (A3)

Dieselweasel (A3)

EpicPhail (A3)

Farber (A3)

Fernando (A3)

Fred313 (A3)

Gemma (A3)

GingkoMaracino (A3)

Grif (A3)

Groupthink (A3)

Grub (A3)

Grum1 (A3)

GtownJaz (A3)

Heathen (A3)

HelDan (A3)

Heliosoles (A3)

Hercules11 (A3)

Hookmount (A3)

Idleandcovert (A3)

Isca (A3)

JenCasNa (A3)

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JF2 (A3)

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JHC117 (A3)

Jobu08 (A3)

KADY (A3)

Kalb97 (A3)

Kalnoky (A3)

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Louie6 (A3)

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MA5 (A3)

MadMarie (A3)

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Bumblebee11 (A4)

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Datway (A4)

Deano (A4)

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EricB (A6)

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Hexamo (A6)

Isiphiwo (A6)

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SuperAwesome (A6)

SuperCallie99 (A6)

ToneTone (A6)

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Wiks (A6)

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Zaka (A6)

Zulu (A6)

DroogsArmy (A7)

HINdeR (A7)

Sheen (A7)

Timshel (A7)

Astro (A8)

Danforth (A8)

Dixon (A8)

Expelliarmus (A8)

NearlyHeadless (A8)

Roary (A8)

Saintus (A8)

Smeadley (A8)

Stephig9 (A8)

Aliter (A9)

Alma (A9)

Arissanae (A9)

Beemo (A9)

BogosyJay (A9)

Catalina (A9)

Charm (A9)

Conquerage (A9)

DreamTeam1 (A9)

Eidsmoe (A9)

Elephantoon (A9)

ExplosioNervosa (A9)

HortumSL17 (A9)

Keziacharles14 (A9)

LoneWolf (A9)

Maminiaina (A9)

Myxus (A9)

PackMan (A9)

Phaeder (A9)

Phonnegut (A9)

Pioneer (A9)

Priya (A9)

Qobbit (A9)

Rahalelujah (A9)

Scherzo (A9)

SheaKeira (A9)

Toaka (A9)

Tubs (A9)

Ugenie5 (A9)

Vanisoa (A9)

Yecey3 (A9)

Annotating InstitutionWashington University in St. Louis
Annotation StatusQC Complete
Plaque NotesSmaller-sized plaques with cloudy center. The plaques have "fuzzy" edges, that are not very clearly defined. The phage went through five rounds of purification, and the plaques still vary in size.
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

Click to View

Danforth_1

Danforth_2
(minor tail protein)

Danforth_3
(minor tail protein)

Danforth_4
(minor tail protein)

Danforth_6
(lysin A)

Danforth_7
(lysin B)

Danforth_8
(terminase)

Danforth_9
(portal protein)

Danforth_10
(capsid maturation protease)

Danforth_11
(scaffolding protein)

Danforth_12
(major capsid protein)

Danforth_13
(head-to-tail adaptor)

Danforth_14

Danforth_15
(head-to-tail stopper)

Danforth_16

Danforth_17
(tail terminator)

Danforth_18
(major tail protein)

Danforth_19
(tail assembly chaperone)

Danforth_20
(tail assembly chaperone)

Danforth_21
(tape measure protein)

Danforth_22
(minor tail protein)

Danforth_23
(minor tail protein)

Danforth_24

Danforth_25

Danforth_26

Danforth_27

Danforth_28

Danforth_29
(serine integrase)

Danforth_30

Danforth_31
(nucleoside deaminase)

Danforth_32

Danforth_33

Danforth_34

Danforth_35

Danforth_36

Danforth_37

Danforth_38

Danforth_39

Danforth_40

Danforth_41

Danforth_42
(DNA polymerase I)

Danforth_43

Danforth_44
(helix-turn-helix DNA binding domain)

Danforth_45

Danforth_46

Danforth_47
(ribonucleotide reductase)

Danforth_48

Danforth_49

Danforth_50

Danforth_51

Danforth_52
(RNA polymerase sigma factor)

Danforth_53
(metallophosphoesterase)

Danforth_54

Danforth_55

Danforth_56

Danforth_57

Danforth_58

Danforth_59
(DNA primase)

Danforth_60
(DNA primase)

Danforth_61

Danforth_62

Danforth_63

Danforth_64
(endonuclease VII)

Danforth_65

Danforth_66

Danforth_67

Danforth_68

Danforth_69

Danforth_70

Danforth_71

Danforth_72
(helix-turn-helix DNA binding domain)

Danforth_73

Danforth_74
(DprA-like DNA processing chain A)

Danforth_75
(phosphoribosyl transferase)

Danforth_76

Danforth_77

Danforth_78
(DNAB-like dsDNA helicase)

Danforth_79

Danforth_80

Danforth_81

Danforth_82

Danforth_83
(Cas4 family exonuclease)

Danforth_84

Danforth_85
(helix-turn-helix DNA binding domain)

Danforth_86

Danforth_87

Danforth_88

Danforth_89

Danforth_90

Danforth_91

Danforth_92

Danforth_93

Danforth_94

Danforth_95
(antirestriction protein, ArdA-like)

Danforth_96

Danforth_97

Danforth_98

Danforth_99

Danforth_100

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?No
GenBank AccessionNone yet
Refseq NumberNone yet
Archiving Info
Archiving status Archived
SEA Designator 2012WUSLDanforthKH
SEA Lysate Titer 8.0X10^7
Date of SEA Lysate Titering Oct 9, 2012
Pitt Freezer Box# 42
Pitt Freezer Box Grid# 8
Available Files
Plaque PictureDownload
GenBank File for PhameratorDownload