The Actinobacteriophage Database

Mycobacterium phage Kipper29

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Detailed Information for Phage Kipper29
Discovery Information
Isolation Host	Mycobacterium smegmatis mc²155
Found By	Mary Marino
Year Found	2018
Location Found	Philadelphia, PA USA
Finding Institution	Saint Joseph's University
Program	Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?	Yes
Isolation Temperature	29°C
GPS Coordinates	39.995556 N, 75.236944 W Map
Discovery Notes	The sample was collected on 9/2/18 at 2:27pm under a tree east of Mandeville Hall at Saint Joseph's University. The soil was dry but cool, and was found 3.5-4.0 cm underground. The ambient temperature was 29ºC with 67% humidity; it was sunny, and had rained two days before.
Naming Notes	I named my phage after a character from a television show I used to watch when I was little, "Kipper the Dog." The theme song was stuck in my head the day we were asked to name the phage. The "29" is a reference to my sister's birthday.
Sequencing Information
Sequencing Complete?	Yes
Date Sequencing Completed	Nov 26, 2018
Sequencing Facility	Pittsburgh Bacteriophage Institute
Shotgun Sequencing Method	Illumina Sequencing
Approximate Shotgun Coverage	2054
Genome length (bp)	52009
Character of genome ends	3' Sticky Overhang
Overhang Length	10 bases
Overhang Sequence	CGGTCGGTTA
GC Content	61.6%
Fasta file available?	Yes: Download fasta file
Characterization
Cluster	A
Subcluster	A6
Cluster Life Cycle	Temperate
Other Cluster Members	Click to View Abrogate (A1) Acme (A1) Adahisdi (A1) Aeneas (A1) AFIS (A1) Ajay (A1) Alsfro (A1) Alvin (A1) Anglerfish (A1) Arcanine (A1) Arlo (A1) Atkinbua (A1) BaconJack (A1) Barriga (A1) Beatrix (A1) BeesKnees (A1) Bethlehem (A1) Bexan (A1) Big3 (A1) Bigfoot (A1) BigMau (A1) BigPaolini (A1) BillKnuckles (A1) Bircsak (A1) Blue (A1) Bob3 (A1) Bones (A1) BPBiebs31 (A1) Briton15 (A1) Bruns (A1) Buttons (A1) Bxb1 (A1) CactusRose (A1) Carlyle (A1) ConceptII (A1) Corvo (A1) Crispicous1 (A1) Cueylyss (A1) DD5 (A1) Doom (A1) Dreamboat (A1) DreamCatcher (A1) DrFeelGood (A1) Dulcie (A1) Dynamix (A1) Edtherson (A1) Euphoria (A1) Fajezeel (A1) Fascinus (A1) Fenn (A1) Forsytheast (A1) Francis47 (A1) Froghopper (A1) Fushigi (A1) GageAP (A1) Gompeii16 (A1) Graduation (A1) Greg (A1) HanShotFirst (A1) HarryOW (A1) HermioneGrange (A1) Homines (A1) Hope4ever (A1) Ichabod (A1) ILeeKay (A1) JackSparrow (A1) Jasper (A1) JC27 (A1) Jerm2 (A1) Jorgensen (A1) Kanely (A1) KBG (A1) Killigrew (A1) KSSJEB (A1) Kugel (A1) Kykar (A1) KyMonks1A (A1) Lamina13 (A1) Lesedi (A1) Lockley (A1) Lopton (A1) Magnar (A1) Magnito (A1) Makemake (A1) Manatee (A1) Marcell (A1) Maroc7 (A1) MaryBeth (A1) McGuire (A1) MetalQZJ (A1) Michley (A1) Moose (A1) MPlant7149 (A1) MrGordo (A1) Mryolo (A1) Mule (A1) Museum (A1) Naira (A1) NEHalo (A1) Nerujay (A1) Nhonho (A1) Niza (A1) Oogway (A1) PacerPaul (A1) Papez (A1) Paphu (A1) Pari (A1) PattyP (A1) Pepe (A1) Perseus (A1) Petp2012 (A1) Petruchio (A1) PherrisBueller (A1) PhrostyMug (A1) PinkPlastic (A1) Pinto (A1) Pippin (A1) Pita2 (A1) PSullivan (A1) Rajelicia (A1) Rhynn (A1) RidgeCB (A1) Ringer (A1) Rohr (A1) Rufus (A1) Ruotula (A1) Rutherferd (A1) Sagefire (A1) SarFire (A1) Scowl (A1) Seabiscuit (A1) Sibs6 (A1) SkiPole (A1) Smairt (A1) Smeagol (A1) Snazzy (A1) Solon (A1) SpikeBT (A1) Squee (A1) StrongArm (A1) Sumter (A1) SwissCheese (A1) Switzer (A1) Target (A1) Tasp14 (A1) TheloniousMonk (A1) Thor (A1) Topgun (A1) Traft412 (A1) Treddle (A1) Tripl3t (A1) Trouble (A1) Turj99 (A1) U2 (A1) Violet (A1) Watermelon (A1) Wheeler (A1) Wilkins (A1) Zeeculate (A1) Zephyr (A1) Zeuska (A1) Chupacabra (A10) Drake94 (A10) Goose (A10) KittenMittens (A10) Kristoff (A10) OKCentral2016 (A10) Rebeuca (A10) RhynO (A10) Severus (A10) Topanga (A10) Trike (A10) Twister (A10) WalterMcMickey (A10) Aneem (A11) Bachome (A11) Bowtie (A11) Bud (A11) Ebony (A11) Et2Brutus (A11) Fibonacci (A11) Flaverint (A11) Hutc2 (A11) Jabith (A11) Joselito (A11) Lucivia (A11) Mabel (A11) Mulciber (A11) Munch (A11) Orange (A11) Salz (A11) Snape (A11) DarthPhader (A12) Pharaoh (A12) Refuge (A12) Steamy (A12) Phlei (A13) Jeeves (A14) Luchador (A14) Anon (A15) JSwag (A15) KatherineG (A15) LastResort (A15) MinecraftSteve (A15) Nedarya (A15) ReMo (A15) Remus (A15) Rosalind (A15) ShayRa (A15) Soups (A15) Strosahl (A15) Waits (A15) EagleEye (A16) Lucyedi (A16) PainterBoy (A16) 40AC (A17) MyraDee (A18) Kimona (A19) 20ES (A2) AbbyPaige (A2) Acolyte (A2) Adzzy (A2) AN3 (A2) AN9 (A2) ANI8 (A2) AnnaL29 (A2) Anselm (A2) ArcherNM (A2) Bactobuster (A2) Baehexic (A2) BengiVuitton (A2) Benvolio (A2) BiancaTri92 (A2) BobSwaget (A2) Bugsy (A2) Centaur (A2) Changeling (A2) Che12 (A2) ChipMunk (A2) CRB1 (A2) Crucio (A2) D29 (A2) D32 (A2) Dalmatian (A2) DBQu4n (A2) Drake55 (A2) DudeLittle (A2) Echild (A2) Equemioh13 (A2) EvilGenius (A2) Fameo (A2) FiringLine (A2) First (A2) Flare16 (A2) GaugeLDP (A2) Georgie2 (A2) Heffalump (A2) Herbertwm (A2) IronMan (A2) Iwokeuplikedis (A2) Jaan (A2) Jerm (A2) JoshKayV (A2) Journey13 (A2) Jsquared (A2) Kalpine (A2) Kerberos (A2) KingCyrus (A2) L5 (A2) LadyBird (A2) Larenn (A2) Leogania (A2) LilTurb (A2) Lokk (A2) Loser (A2) Malec (A2) Miko (A2) MissWhite (A2) Naji (A2) NaSiaTalie (A2) NicoleTera (A2) NothingSpecial (A2) Odin (A2) Ph8s (A2) Phaded (A2) Piro94 (A2) Pomar16 (A2) Power (A2) Pukovnik (A2) QueenB2 (A2) QueenBeesly (A2) Rachaly (A2) RedRock (A2) Retro23 (A2) SemperFi (A2) Serenity (A2) SnapTap (A2) StarStuff (A2) Superchunk (A2) SweetiePie (A2) TipsytheTRex (A2) Tomathan (A2) Trixie (A2) Turbido (A2) Updawg (A2) VA6 (A2) VC3 (A2) Whabigail7 (A2) WideWale (A2) XianYue (A2) Anthony (A20) ACFishhook (A3) Aglet (A3) AgronaGT15 (A3) Anubis (A3) AugsMagnumOpus (A3) BabyRay (A3) Beauxregard13 (A3) BreSam8 (A3) BuzzBuzz (A3) Bxz2 (A3) Caviar (A3) DaHudson (A3) Daishi (A3) Dieselweasel (A3) EpicPhail (A3) Farber (A3) Fernando (A3) Fred313 (A3) Gemma (A3) GingkoMaracino (A3) Groupthink (A3) Grub (A3) Grum1 (A3) GtownJaz (A3) Heathen (A3) HelDan (A3) Heliosoles (A3) Hercules11 (A3) Hookmount (A3) Idleandcovert (A3) Isca (A3) JenCasNa (A3) JeppNRM (A3) JF2 (A3) JF4 (A3) JHC117 (A3) Jobu08 (A3) KADY (A3) Kalb97 (A3) Kalnoky (A3) Lambert1 (A3) Lilith (A3) Louie6 (A3) LugYA (A3) MA5 (A3) MadMarie (A3) Mainiac (A3) Malinsilva (A3) Margo (A3) Marie (A3) Marius (A3) MarQuardt (A3) Methuselah (A3) Microwolf (A3) Misomonster (A3) MK4 (A3) MoneyMay (A3) MuchMore (A3) Noella (A3) Norbert (A3) OlanP (A3) Ollie (A3) P28Green (A3) Panamaxus (A3) Penny1 (A3) PGHhamlin (A3) Phantastic (A3) PhishRPhriends (A3) Phoxy (A3) Phranny (A3) Pistachio (A3) Pocahontas (A3) Popcicle (A3) PotatoSplit (A3) Puppy (A3) PurpleHaze (A3) QuinnKiro (A3) Reba (A3) Rockstar (A3) Sabia (A3) Sabinator (A3) SoilDragon (A3) Soshari (A3) Spike509 (A3) Stagni (A3) StepMih (A3) Taurus (A3) Texage (A3) Tiffany (A3) TNguyen7 (A3) Todacoro (A3) Veracruz (A3) Vix (A3) Watson (A3) Wooldri (A3) Zetzy (A3) AbbysRanger (A4) Abdiel (A4) Achebe (A4) Albee (A4) Annyong (A4) Arturo (A4) AvatarAhPeg (A4) Avle17 (A4) Baby16 (A4) Backyardigan (A4) Badger (A4) Bartimeaus (A4) BellusTerra (A4) Blackmoor (A4) Bombshell (A4) Broseidon (A4) Bruiser (A4) BubbleTrouble (A4) Bumblebee11 (A4) Burger (A4) Caelakin (A4) Camperdownii (A4) CentreCat (A4) Cerulean (A4) ChampagnePapi (A4) Chaph (A4) Cici (A4) Cindaradix (A4) Cintron (A4) Citius (A4) Clarenza (A4) Cocoaberry (A4) Commander (A4) Connomayer (A4) Datway (A4) Deano (A4) Dhanush (A4) DirtyDunning (A4) Druantia (A4) Eagle (A4) Eapen (A4) Eris (A4) Eros (A4) Florean (A4) Flux (A4) Funston (A4) Gadost (A4) HamSlice (A4) Holli (A4) Houdini22 (A4) ICleared (A4) Iracema64 (A4) Jaykayelowell (A4) JetBlade (A4) JoongJeon (A4) Kampy (A4) Katalie136 (A4) KFPoly (A4) Kingmustik0402 (A4) Kratark (A4) Kyee (A4) Lemur (A4) LeoAvram (A4) LHTSCC (A4) LittleB (A4) LittleGuy (A4) Lorenzo (A4) Maverick (A4) Mazhar510 (A4) Medusa (A4) MeeZee (A4) Melvin (A4) Millski (A4) Miramae (A4) Morpher26 (A4) Morrow (A4) Mundrea (A4) Nebs (A4) Nemo27 (A4) Noelle (A4) NorthStar (A4) NotAPhaseMom (A4) Nyxis (A4) Obama12 (A4) Ohfah (A4) OKaNui (A4) Palestino (A4) Peaches (A4) PeterPeter (A4) Phacado (A4) Phighter1804 (A4) Phontbonne (A4) Pipcraft (A4) Polymorphads (A4) Relief (A4) Romney (A4) Roosevelt (A4) Ruin (A4) Sabertooth (A4) Scamp (A4) Shaka (A4) SheldonCooper (A4) Skipitt (A4) Stasia (A4) Taquarus (A4) Thanksgivukkah (A4) TinaFeyge (A4) Tinybot (A4) TiroTheta9 (A4) TroyPia (A4) TygerBlood (A4) Wander (A4) Wilbur (A4) Wile (A4) Wizard007 (A4) Xena (A4) AgentM (A5) Airmid (A5) Aragog (A5) Archetta (A5) Benedict (A5) Bluefalcon (A5) Chadwick (A5) Conspiracy (A5) Coog (A5) Cuco (A5) Dublin (A5) ElTiger69 (A5) ForGetIt (A5) George (A5) HuhtaEnerson15 (A5) Jabiru (A5) Jovo (A5) Lev2 (A5) LittleCherry (A5) MarysWell (A5) Midas2 (A5) Naca (A5) PetterN (A5) Phlorence (A5) Scorpia (A5) Swirley (A5) Tarynearal (A5) Theia (A5) Tiger (A5) UnionJack (A5) Zolita (A5) Artemis2UCLA (A6) Blinn1 (A6) Blue7 (A6) CloudWang3 (A6) DaVinci (A6) EricB (A6) Gladiator (A6) GreedyLawyer (A6) Gruunaga (A6) Hammer (A6) Hexamo (A6) Isiphiwo (A6) Jeffabunny (A6) JewelBug (A6) Jordennis (A6) Kazan (A6) Kipper29 (A6) Koko (A6) McFly (A6) Pmask (A6) Priamo (A6) SmellyB (A6) SuperAwesome (A6) SuperCallie99 (A6) ToneTone (A6) VohminGhazi (A6) Wiks (A6) WunderPhul (A6) Yokurt (A6) Zaka (A6) Zulu (A6) DroogsArmy (A7) HINdeR (A7) Sheen (A7) Timshel (A7) Astro (A8) Danforth (A8) Dixon (A8) Expelliarmus (A8) NearlyHeadless (A8) Roary (A8) Saintus (A8) Smeadley (A8) Stephig9 (A8) Aliter (A9) Alma (A9) Arissanae (A9) Beemo (A9) BogosyJay (A9) Catalina (A9) Charm (A9) Conquerage (A9) DreamTeam1 (A9) Eidsmoe (A9) Elephantoon (A9) ExplosioNervosa (A9) HortumSL17 (A9) Keziacharles14 (A9) LoneWolf (A9) Maminiaina (A9) Myxus (A9) PackMan (A9) Phaeder (A9) Phonnegut (A9) Pioneer (A9) Priya (A9) Qobbit (A9) Rahalelujah (A9) Scherzo (A9) SheaKeira (A9) Toaka (A9) Tubs (A9) Ugenie5 (A9) Vanisoa (A9) Yecey3 (A9)
Annotating Institution	Saint Joseph's University
Annotation Status	In GenBank
Plaque Notes	The plaques were mostly turbid and slightly cloudy, indicating a temperate phage. The average size of the plaques was between 3 mm and 5 mm in diameter after 24-48 hours in the incubator at 37ºC.
Morphotype	Siphoviridae
Has been Phamerated?	Yes
Gene List	Click to View Kipper29_1 Kipper29_2 Kipper29_3 Kipper29_4 (HNH endonuclease) Kipper29_5 Kipper29_6 (minor tail protein) Kipper29_7 (minor tail protein) Kipper29_8 Kipper29_12 Kipper29_13 (lysin A) Kipper29_14 (holin) Kipper29_15 (terminase) Kipper29_16 (portal protein) Kipper29_17 (MuF-like minor capsid protein) Kipper29_18 (scaffolding protein) Kipper29_19 (major capsid protein) Kipper29_20 Kipper29_21 (head-to-tail adaptor) Kipper29_22 Kipper29_23 (head-to-tail stopper) Kipper29_24 Kipper29_25 (tail terminator) Kipper29_26 (major tail protein) Kipper29_27 (tail assembly chaperone) Kipper29_28 (tail assembly chaperone) Kipper29_29 (tape measure protein) Kipper29_30 (minor tail protein) Kipper29_31 (minor tail protein) Kipper29_32 Kipper29_33 Kipper29_34 (minor tail protein) Kipper29_35 Kipper29_36 Kipper29_37 (ParA-like dsDNA partitioning protein) Kipper29_38 (ParB-like dsDNA partitioning protein) Kipper29_39 Kipper29_40 (deoxycytidylate deaminase) Kipper29_41 Kipper29_42 Kipper29_43 Kipper29_44 Kipper29_45 (DNA polymerase I) Kipper29_46 Kipper29_47 Kipper29_48 (RNA ligase) Kipper29_49 (helix-turn-helix DNA binding domain protein) Kipper29_50 Kipper29_51 (ThyX-like thymidylate synthase) Kipper29_52 Kipper29_53 (ribonucleotide reductase) Kipper29_54 Kipper29_55 Kipper29_56 (RNA polymerase sigma factor) Kipper29_57 Kipper29_58 Kipper29_59 Kipper29_60 (DNA primase) Kipper29_61 (DNA primase) Kipper29_62 Kipper29_63 (endonuclease VII) Kipper29_64 (membrane protein) Kipper29_65 Kipper29_66 Kipper29_67 Kipper29_68 Kipper29_69 (membrane protein) Kipper29_70 (DnaB-like dsDNA helicase) Kipper29_71 Kipper29_72 Kipper29_73 Kipper29_74 Kipper29_75 Kipper29_76 (Cas4 family exonuclease) Kipper29_77 Kipper29_78 (immunity repressor) Kipper29_79 Kipper29_80 Kipper29_81 Kipper29_82 Kipper29_83 Kipper29_84 (SprT-like protease) Kipper29_85 Kipper29_86 Kipper29_87 (membrane protein) Kipper29_88 Kipper29_89 (DNA methylase) Kipper29_90 Kipper29_91 Kipper29_92 Kipper29_93 Kipper29_94 Kipper29_95 Kipper29_96 Kipper29_97 Kipper29_98 Kipper29_99 Kipper29_100 Kipper29_101
Submitted Annotation in DNA Master Format	Download
Submitted Minimal DNA Master File	Download
Author List	Download
Annotation Cover Sheet	Download
Publication Info
Uploaded to GenBank?	Yes
GenBank Accession	MK894433
Refseq Number	None yet
Archiving Info
Archiving status	Archived
Pitt Freezer Box#	85
Pitt Freezer Box Grid#	E1
Available Files
Plaque Picture	Download
Restriction Digest Picture	Download
EM Picture	Download
GenBank File for Phamerator	Download

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