| Detailed Information for Phage GageAP |
| Discovery Information |
| Isolation Host | Mycobacterium smegmatis mc²155 |
| Found By | Madison Roll/ Atticus Proctor |
| Year Found | 2013 |
| Location Found | Helena, MT USA |
| Finding Institution | Helena High School |
| Program | Montana Tech Bringing Research Into the Classroom |
| From enriched soil sample? | No |
| Isolation Temperature | Not entered |
| GPS Coordinates | 46.6002 N, 112.054 W Map |
| Discovery Notes | Found in garden soil. Outreach visit to CR Anderson Middle School Helena, MT. |
| Sequencing Information |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Feb 18, 2014 |
| Sequencing Facility | Virginia Commonwealth University Nucleic Acids Research Facilities |
| Shotgun Sequencing Method | 454 Pyrosequencing |
| Approximate Shotgun Coverage | 425 |
| Sanger Finishing Reactions | 2 |
| Genome length (bp) | 51904 |
| Character of genome ends | 3' Sticky Overhang |
| Overhang Length | 10 bases |
| Overhang Sequence | CGGATGGTAA |
| GC Content | 63.5% |
| Fasta file available? | Yes: Download fasta file |
| Characterization |
| Cluster | A |
| Subcluster | A1 |
| Cluster Life Cycle | Temperate |
| Other Cluster Members |
|
| Annotation Status | In GenBank |
| Plaque Notes | Large turbid plaques with halos. |
| Morphotype | Siphoviridae |
| Has been Phamerated? | Yes |
| Gene List |
|
| Submitted Annotation in DNA Master Format | Download |
| Submitted Minimal DNA Master File | Download |
| Author List | Download |
| Annotation Cover Sheet | Download |
| Publication Info |
| Uploaded to GenBank? | Yes |
| GenBank Accession | MH020236 |
| Refseq Number | None yet |
| Published in Paper | Pope, Bowman, Russell, et al 2015, eLIFE: Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity |
| Archiving Info |
| Archiving status |
Archived |
| Pitt Freezer Box# |
3 |
| Pitt Freezer Box Grid# |
G9 |
| Available Files |
| EM Picture | Download |
| GenBank File for Phamerator | Download |