Detailed Information for Phage GageAP |
Discovery Information |
Isolation Host | Mycobacterium smegmatis mc²155 |
Found By | Madison Roll/ Atticus Proctor |
Year Found | 2013 |
Location Found | Helena, MT USA |
Finding Institution | Helena High School |
Program | Montana Tech Bringing Research Into the Classroom |
From enriched soil sample? | No |
Isolation Temperature | Not entered |
GPS Coordinates | 46.6002 N, 112.054 W Map |
Discovery Notes | Found in garden soil. Outreach visit to CR Anderson Middle School Helena, MT. |
Sequencing Information |
Sequencing Complete? | Yes |
Date Sequencing Completed | Feb 18, 2014 |
Sequencing Facility | Virginia Commonwealth University Nucleic Acids Research Facilities |
Shotgun Sequencing Method | 454 Pyrosequencing |
Approximate Shotgun Coverage | 425 |
Sanger Finishing Reactions | 2 |
Genome length (bp) | 51904 |
Character of genome ends | 3' Sticky Overhang |
Overhang Length | 10 bases |
Overhang Sequence | CGGATGGTAA |
GC Content | 63.5% |
Fasta file available? | Yes: Download fasta file |
Characterization |
Cluster | A |
Subcluster | A1 |
Cluster Life Cycle | Temperate |
Other Cluster Members |
|
Annotating Institution | Helena High School |
Annotation Status | In GenBank |
Plaque Notes | Large turbid plaques with halos. |
Morphotype | Siphoviridae |
Has been Phamerated? | Yes |
Gene List |
|
Submitted Annotation in DNA Master Format | Download |
Submitted Minimal DNA Master File | Download |
Author List | Download |
Annotation Cover Sheet | Download |
Publication Info |
Uploaded to GenBank? | Yes |
GenBank Accession | MH020236 |
Refseq Number | None yet |
Published in Paper | Pope, Bowman, Russell, et al 2015, eLIFE: Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity |
Archiving Info |
Archiving status |
Archived |
Pitt Freezer Box# |
3 |
Pitt Freezer Box Grid# |
G9 |
Available Files |
EM Picture | Download |
GenBank File for Phamerator | Download |