Detailed Information for Phage NaSiaTalie |
Discovery Information |
Isolation Host | Mycobacterium smegmatis mc²155 |
Found By | William Biederman |
Year Found | 2015 |
Location Found | Pittsburgh, PA USA |
Finding Institution | Howard Hughes Medical Institute |
Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
From enriched soil sample? | Yes |
Isolation Temperature | 37°C |
GPS Coordinates | 40.446065 N, 79.955076 W Map |
Discovery Notes | Thank you to Debbie for the tour of Pittsburgh. This phage was found at University Center across from the Hatfull lab. |
Naming Notes | Combo of my daughters' first names. |
Sequencing Information |
Sequencing Complete? | Yes |
Date Sequencing Completed | Aug 3, 2015 |
Sequencing Facility | Pittsburgh Bacteriophage Institute |
Shotgun Sequencing Method | Illumina Sequencing |
Approximate Shotgun Coverage | 2022 |
Genome length (bp) | 52920 |
Character of genome ends | 3' Sticky Overhang |
Overhang Length | 10 bases |
Overhang Sequence | CGGTCGGTTA |
GC Content | 63.4% |
Fasta file available? | Yes: Download fasta file |
Characterization |
Cluster | A |
Subcluster | A2 |
Cluster Life Cycle | Temperate |
Other Cluster Members |
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Annotating Institution | Unknown or unassigned |
Annotation Status | In GenBank |
Plaque Notes | Plaques are turbid and have a bull's eye appearance with a clearer center and at least 2 concentric rings around it. Plaques range in size from 2-4 mm. |
Morphotype | Siphoviridae |
Number of Genes | 99 |
Has been Phamerated? | Yes |
Gene List |
|
Publication Info |
Uploaded to GenBank? | Yes |
GenBank Accession | KU297783 |
Refseq Number | None yet |
Archiving Info |
Archiving status |
Archived |
Pitt Freezer Box# |
7 |
Pitt Freezer Box Grid# |
G6 |
Available Files |
Plaque Picture | Download |
Final DNAMaster File | Download |