Mycobacterium phage D29
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Detailed Information for Phage D29
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Duplicates of this PhageAgnaTexea16, Jinga3000, Lakes
Found ByS. Froman
Year Found1954
Location FoundCA USA
Finding InstitutionUniversity of California, Los Angeles
ProgramUnavailable
From enriched soil sample?Unknown
Isolation TemperatureNot entered
GPS Coordinates34.073137 N, 118.442402 W Map
Mutants
Mutants of this Phage

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phiTM38

phiTM43

phiTM44

Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedSep 2, 1997
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodSanger Sequencing
Genome length (bp)49127
Character of genome ends3' Sticky Overhang
Overhang Length10 bases
Overhang SequenceCGGTCGGTTA
GC Content63.5%
Sequencing NotesThere were 6 errors in the originally published D29 sequence that we identified over the years after resequencing. In addition, the original D29 sequence had the 3' overhang published on both ends. The current file has correct the 6 errors, and has the overhang only at the right end to conform to our standards. The length is 49127 instead of the original 49136.
Fasta file available?Yes: Download fasta file
Characterization
ClusterA
SubclusterA2
Cluster Life CycleTemperate
Other Cluster Members

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Chargerpower (None)

Abbyshoes (A1)

Abrogate (A1)

Acme (A1)

Adahisdi (A1)

Aeneas (A1)

AFIS (A1)

Agaliana (A1)

Ajay (A1)

Alsfro (A1)

Altman (A1)

Alvin (A1)

Anglerfish (A1)

Applejack (A1)

Arcanine (A1)

Arlo (A1)

Ashballer (A1)

Atkinbua (A1)

BaconJack (A1)

Barriga (A1)

Beatrix (A1)

BeesKnees (A1)

Bethlehem (A1)

Bexan (A1)

Big3 (A1)

Bigfoot (A1)

BigMau (A1)

BigPaolini (A1)

BillKnuckles (A1)

Bircsak (A1)

Blue (A1)

BluSpix (A1)

Bob3 (A1)

Bones (A1)

BPBiebs31 (A1)

Briton15 (A1)

Bruns (A1)

Burton (A1)

Buttons (A1)

Bxb1 (A1)

CactusRose (A1)

Carlyle (A1)

Chanagan (A1)

Ciao (A1)

ConceptII (A1)

Corvo (A1)

Crispicous1 (A1)

Cueylyss (A1)

DD5 (A1)

Dexes (A1)

Doom (A1)

Dreamboat (A1)

DreamCatcher (A1)

DrFeelGood (A1)

Dulcie (A1)

Dussy (A1)

Dynamix (A1)

Edtherson (A1)

Espresso (A1)

Euphoria (A1)

Eyeball (A1)

Fajezeel (A1)

Fascinus (A1)

Fenn (A1)

Forsytheast (A1)

Francis47 (A1)

Froghopper (A1)

Fushigi (A1)

GageAP (A1)

Gandalf20 (A1)

Gompeii16 (A1)

Graduation (A1)

GrecoEtereo (A1)

Greg (A1)

Gwendoluna (A1)

Gyzlar (A1)

Hami1 (A1)

HanShotFirst (A1)

HarryOW (A1)

Hermia (A1)

HermioneGrange (A1)

Homines (A1)

Hope4ever (A1)

Ichabod (A1)

IgnatiusPatJac (A1)

ILeeKay (A1)

Inyanga (A1)

JackSparrow (A1)

Jasper (A1)

JC27 (A1)

Jerm2 (A1)

Jorgensen (A1)

JuliaChild (A1)

Kanely (A1)

KBG (A1)

Kenmech (A1)

Killigrew (A1)

KSSJEB (A1)

Kugel (A1)

Kykar (A1)

KyMonks1A (A1)

Lamina13 (A1)

Lesedi (A1)

Licorice (A1)

LilBib (A1)

Lockley (A1)

Lopton (A1)

Magnar (A1)

Magnito (A1)

Makemake (A1)

Manatee (A1)

Marcell (A1)

Marchy (A1)

Marge (A1)

Maroc7 (A1)

Marsha (A1)

MaryBeth (A1)

McGuire (A1)

MetalQZJ (A1)

Michley (A1)

Mkhuseli (A1)

Molly (A1)

Monet (A1)

Moose (A1)

MPlant7149 (A1)

MrGordo (A1)

Mryolo (A1)

Mule (A1)

Museum (A1)

Naira (A1)

NEHalo (A1)

Nerujay (A1)

Nhonho (A1)

Niza (A1)

Norz (A1)

Ohno789 (A1)

Oogway (A1)

PacerPaul (A1)

Papez (A1)

Paphu (A1)

Paraselene (A1)

Pari (A1)

Parliament (A1)

PascalRango (A1)

PattyP (A1)

Payneful (A1)

Pelly (A1)

Pepe (A1)

Perseus (A1)

Peterson (A1)

Petp2012 (A1)

Petruchio (A1)

PherrisBueller (A1)

PhrostyMug (A1)

PinkPlastic (A1)

Pinto (A1)

Pippin (A1)

Pita2 (A1)

ProMouse (A1)

PSullivan (A1)

QTRlifeCrisis (A1)

Rajelicia (A1)

Rhynn (A1)

RidgeCB (A1)

Ringer (A1)

Rohr (A1)

Rubeus (A1)

Rufus (A1)

Ruotula (A1)

Rutherferd (A1)

Sagefire (A1)

Sandaddy (A1)

Sanya (A1)

SarFire (A1)

Scowl (A1)

Seabiscuit (A1)

Seanderson (A1)

ShortQueendom (A1)

Sibs6 (A1)

SkiPole (A1)

Slagathor (A1)

Smairt (A1)

Smeagol (A1)

Snazzy (A1)

Solon (A1)

Sorpresa (A1)

SpikeBT (A1)

Squee (A1)

StewieG (A1)

STLscum (A1)

StrongArm (A1)

Sumter (A1)

Sunshine924 (A1)

SwissCheese (A1)

Switzer (A1)

Swole (A1)

Target (A1)

Tasp14 (A1)

Teodoridan (A1)

TheloniousMonk (A1)

Thor (A1)

Topgun (A1)

Tote (A1)

Traft412 (A1)

Treddle (A1)

Tripl3t (A1)

Trouble (A1)

Turj99 (A1)

TwoPeat (A1)

U2 (A1)

Violet (A1)

Watermelon (A1)

Wheeler (A1)

Wilkins (A1)

Zeeculate (A1)

Zephyr (A1)

Zeuska (A1)

Chupacabra (A10)

DontArgue (A10)

Drake94 (A10)

DustyMartin (A10)

Eaglepride (A10)

Edison31 (A10)

Goose (A10)

KittenMittens (A10)

Kristoff (A10)

OKCentral2016 (A10)

PeaceMeal1 (A10)

Poompha (A10)

Rebeuca (A10)

RhynO (A10)

Rowdy (A10)

Severus (A10)

Shapes (A10)

Topanga (A10)

Trike (A10)

Twister (A10)

WalterMcMickey (A10)

Aneem (A11)

Bachome (A11)

Bowtie (A11)

Bud (A11)

Ebony (A11)

Et2Brutus (A11)

Fibonacci (A11)

Flaverint (A11)

Gilberta (A11)

Hutc2 (A11)

Insomnia (A11)

Jabith (A11)

Joselito (A11)

Lucivia (A11)

Mabel (A11)

MaCh (A11)

Mulciber (A11)

Munch (A11)

Orange (A11)

Petersenfast (A11)

Salz (A11)

Sham4 (A11)

Snape (A11)

Timothy (A11)

TinyTimmy (A11)

DarthPhader (A12)

Pharaoh (A12)

Refuge (A12)

Steamy (A12)

Zimmer (A12)

Phlei (A13)

Gail (A14)

Jeeves (A14)

Luchador (A14)

SororFago (A14)

Sunhee (A14)

Anaysia (A15)

Anon (A15)

Battleship (A15)

Boohoo (A15)

DekHockey33 (A15)

Epsocamisio (A15)

JSwag (A15)

KatherineG (A15)

LastResort (A15)

Looper (A15)

MinecraftSteve (A15)

Nebulosus (A15)

Nedarya (A15)

Oofda (A15)

ReMo (A15)

Remus (A15)

Rosalind (A15)

ShayRa (A15)

Soups (A15)

Strosahl (A15)

Switzerland (A15)

Waits (A15)

EagleEye (A16)

Lucyedi (A16)

PainterBoy (A16)

40AC (A17)

MyraDee (A18)

Kimona (A19)

20ES (A2)

AbbyPaige (A2)

Acolyte (A2)

Adzzy (A2)

Agape74 (A2)

AN3 (A2)

AN9 (A2)

ANI8 (A2)

AnnaL29 (A2)

Anselm (A2)

ArcherNM (A2)

BabyBack (A2)

Bactobuster (A2)

Baehexic (A2)

BengiVuitton (A2)

Benvolio (A2)

BiancaTri92 (A2)

BobSwaget (A2)

Bradman (A2)

Bugsy (A2)

Caraxes (A2)

Centaur (A2)

Changeling (A2)

Che12 (A2)

ChipMunk (A2)

Colin (A2)

CRB1 (A2)

Crucio (A2)

D29 (A2)

D32 (A2)

Dalmatian (A2)

DBQu4n (A2)

Deloris (A2)

Dignity (A2)

Drake55 (A2)

DudeLittle (A2)

Duplo (A2)

Echild (A2)

Equemioh13 (A2)

EvilGenius (A2)

EZMoney23 (A2)

Fameo (A2)

FiringLine (A2)

First (A2)

Flare16 (A2)

GaugeLDP (A2)

Georgie2 (A2)

HarryHoudini (A2)

Heffalump (A2)

Herbertwm (A2)

IronMan (A2)

Iwokeuplikedis (A2)

Jaan (A2)

Jerm (A2)

JoshKayV (A2)

Journey13 (A2)

Jsquared (A2)

Kalpine (A2)

Kerberos (A2)

KingCyrus (A2)

Koduck (A2)

L5 (A2)

LadyBird (A2)

Landor (A2)

Larenn (A2)

Leogania (A2)

Leviathan (A2)

LilTurb (A2)

Lokk (A2)

Loser (A2)

MajorMajor (A2)

Malec (A2)

MiculUcigas (A2)

Miko (A2)

MissWhite (A2)

Naji (A2)

NaSiaTalie (A2)

NicoleTera (A2)

NothingSpecial (A2)

Odin (A2)

Ph8s (A2)

Phaded (A2)

Piro94 (A2)

Pomar16 (A2)

Power (A2)

Pukovnik (A2)

QueenB2 (A2)

QueenBeesly (A2)

Quokka (A2)

Rachaly (A2)

RedRock (A2)

Retro23 (A2)

SemperFi (A2)

Serenity (A2)

Smeagan (A2)

SnapTap (A2)

StarStuff (A2)

Superchunk (A2)

SweetiePie (A2)

SwirlSquare (A2)

TarsusIV (A2)

TipsytheTRex (A2)

Tomathan (A2)

Travvers (A2)

Trixie (A2)

Trooper (A2)

Turbido (A2)

Updawg (A2)

VA6 (A2)

VC3 (A2)

WeiHuaDA (A2)

Whabigail7 (A2)

WideWale (A2)

XianYue (A2)

Anthony (A20)

Kinmap (A21)

ACFishhook (A3)

Aglet (A3)

AgronaGT15 (A3)

Anubis (A3)

AugsMagnumOpus (A3)

BabyJohn (A3)

BabyRay (A3)

Beauxregard13 (A3)

BlueBird (A3)

BreSam8 (A3)

Bugatti (A3)

BuzzBuzz (A3)

Bxz2 (A3)

Caviar (A3)

Chiqui (A3)

Colbster (A3)

Cullens (A3)

DaHudson (A3)

Daishi (A3)

Dieselweasel (A3)

DropBear (A3)

EpicPhail (A3)

Farber (A3)

Fernando (A3)

Fred313 (A3)

Gemma (A3)

GingkoMaracino (A3)

Giroux (A3)

Grif (A3)

Groupthink (A3)

Grub (A3)

Grum1 (A3)

GtownJaz (A3)

HashRod (A3)

HaveUMetTed (A3)

Heathen (A3)

HelDan (A3)

Heliosoles (A3)

Hercules11 (A3)

Hookmount (A3)

Idleandcovert (A3)

Isca (A3)

JenCasNa (A3)

JeppNRM (A3)

JF2 (A3)

JF4 (A3)

JHC117 (A3)

Jobu08 (A3)

Kachowdy (A3)

KADY (A3)

Kalb97 (A3)

Kalnoky (A3)

Lambert1 (A3)

LarryKay (A3)

LBerry (A3)

Lilith (A3)

Louie6 (A3)

LugYA (A3)

MA5 (A3)

MadMarie (A3)

Mainiac (A3)

Malinsilva (A3)

Manu (A3)

Marchesa (A3)

Margo (A3)

Marie (A3)

Marius (A3)

MarQuardt (A3)

Methuselah (A3)

Microwolf (A3)

Misomonster (A3)

MK4 (A3)

MoneyMay (A3)

MuchMore (A3)

Noella (A3)

Norbert (A3)

OlanP (A3)

Ollie (A3)

P28Green (A3)

Panamaxus (A3)

Pawn (A3)

Pembroke (A3)

Penny1 (A3)

PGHhamlin (A3)

Phantastic (A3)

PhishRPhriends (A3)

Phoebe (A3)

Phoxy (A3)

Phranny (A3)

Pistachio (A3)

Pocahontas (A3)

Popcicle (A3)

PotatoSplit (A3)

Puppy (A3)

PurpleHaze (A3)

QuinnKiro (A3)

Reba (A3)

ResDef (A3)

Rockstar (A3)

Rummer (A3)

Sabia (A3)

Sabinator (A3)

SaturnRing (A3)

Scout (A3)

Snickers (A3)

SoilDragon (A3)

Soshari (A3)

SoYo (A3)

Spike509 (A3)

Stagni (A3)

StepMih (A3)

Taurus (A3)

Texage (A3)

Tiffany (A3)

TNguyen7 (A3)

Todacoro (A3)

Veracruz (A3)

Vix (A3)

Watson (A3)

Wooldri (A3)

Zetzy (A3)

AbbysRanger (A4)

Abdiel (A4)

Achebe (A4)

Albee (A4)

Alberto7 (A4)

Annyong (A4)

Arturo (A4)

AvatarAhPeg (A4)

Avle17 (A4)

Baby16 (A4)

Backyardigan (A4)

Badger (A4)

BangNhom (A4)

Bartimeaus (A4)

BellusTerra (A4)

Blackmoor (A4)

Bombshell (A4)

Broseidon (A4)

Bruiser (A4)

BubbleTrouble (A4)

Bumblebee11 (A4)

Burger (A4)

Caelakin (A4)

Camperdownii (A4)

CentreCat (A4)

Cerulean (A4)

ChampagnePapi (A4)

Chaph (A4)

Cici (A4)

Cindaradix (A4)

Cintron (A4)

Citius (A4)

Clarenza (A4)

Cocoaberry (A4)

Commander (A4)

Connomayer (A4)

Datway (A4)

Deano (A4)

Dhanush (A4)

DirtyDunning (A4)

Druantia (A4)

Eagle (A4)

Eapen (A4)

Eris (A4)

Eros (A4)

Eurydice (A4)

Florean (A4)

Flux (A4)

Funston (A4)

Gadost (A4)

HamSlice (A4)

Happiness (A4)

Holli (A4)

Houdini22 (A4)

Iceman (A4)

ICleared (A4)

Iracema64 (A4)

Jaykayelowell (A4)

JetBlade (A4)

JoongJeon (A4)

Kampy (A4)

Katalie136 (A4)

KFPoly (A4)

Kingmustik0402 (A4)

Koreni (A4)

Kratark (A4)

Kremtemulon (A4)

Kyee (A4)

LappelDuVide (A4)

Lemur (A4)

LeoAvram (A4)

LHTSCC (A4)

LittleB (A4)

LittleGuy (A4)

LochMonster (A4)

Lorenzo (A4)

Lunsford (A4)

Maverick (A4)

Maxo (A4)

Mazhar510 (A4)

Medusa (A4)

MeeZee (A4)

Melvin (A4)

Millski (A4)

Miramae (A4)

Morpher26 (A4)

Morrow (A4)

Mundrea (A4)

Nebs (A4)

Nemo27 (A4)

Noelle (A4)

NorthStar (A4)

NotAPhaseMom (A4)

Nyxis (A4)

Obama12 (A4)

Ohfah (A4)

OKaNui (A4)

Palestino (A4)

Peaches (A4)

Perplexer (A4)

PeterPeter (A4)

PetiteSangsue (A4)

Phacado (A4)

Phelipe (A4)

Phighter1804 (A4)

Phontbonne (A4)

Pipcraft (A4)

Polymorphads (A4)

Pumbaa (A4)

Relief (A4)

Romney (A4)

Roosevelt (A4)

Rosa24 (A4)

Ruin (A4)

Sabertooth (A4)

Scamp (A4)

Shaka (A4)

SheldonCooper (A4)

Shygu2 (A4)

Skipitt (A4)

Sparxx (A4)

Spino (A4)

Stasia (A4)

Stink (A4)

Taquarus (A4)

Thanksgivukkah (A4)

TinaFeyge (A4)

Tinybot (A4)

TiroTheta9 (A4)

TroyPia (A4)

TygerBlood (A4)

Ulysses (A4)

Wander (A4)

Wilbur (A4)

Wile (A4)

Wizard007 (A4)

Xena (A4)

YoSam321 (A4)

AgentM (A5)

Airmid (A5)

Aragog (A5)

Archetta (A5)

Benedict (A5)

Bluefalcon (A5)

Bonamassa (A5)

Chadwick (A5)

Conspiracy (A5)

Coog (A5)

Cuco (A5)

Discoknowium (A5)

Dublin (A5)

ElTiger69 (A5)

ForGetIt (A5)

George (A5)

Ghoulboy (A5)

HuhtaEnerson15 (A5)

Jabiru (A5)

Jovo (A5)

Lev2 (A5)

LittleCherry (A5)

MarysWell (A5)

Micasa (A5)

Midas2 (A5)

Milcery (A5)

Naca (A5)

PetterN (A5)

Phlorence (A5)

PickleBack (A5)

Scorpia (A5)

Swirley (A5)

SydNat (A5)

Tarynearal (A5)

Theia (A5)

Tiger (A5)

Twigg (A5)

UnionJack (A5)

Zolita (A5)

Artemis2UCLA (A6)

BABullseye (A6)

Blinn1 (A6)

Blue7 (A6)

Candra (A6)

Chartreuse (A6)

CloudWang3 (A6)

Cookiedough (A6)

DaVinci (A6)

Dorothea (A6)

EricB (A6)

Garak (A6)

Gladiator (A6)

GreedyLawyer (A6)

Gruunaga (A6)

Hammer (A6)

Helmet (A6)

Hexamo (A6)

Hoot (A6)

Indra (A6)

Isiphiwo (A6)

Jeffabunny (A6)

JewelBug (A6)

Jordennis (A6)

Kazan (A6)

Kipper29 (A6)

Koko (A6)

Lilbunny (A6)

McFly (A6)

Neeharika16 (A6)

Newrala (A6)

Pmask (A6)

Priamo (A6)

Rifter (A6)

Roksolana (A6)

SmellyB (A6)

SuperAwesome (A6)

SuperCallie99 (A6)

ToneTone (A6)

Tucker (A6)

VohminGhazi (A6)

Wiks (A6)

WunderPhul (A6)

Yokurt (A6)

Zaka (A6)

Zulu (A6)

DroogsArmy (A7)

FlyCatcher (A7)

HINdeR (A7)

Sheen (A7)

Timshel (A7)

Toro (A7)

Astro (A8)

Danforth (A8)

Dixon (A8)

Expelliarmus (A8)

Groundhog (A8)

NearlyHeadless (A8)

Phillis (A8)

Roary (A8)

Saintus (A8)

Smeadley (A8)

Stephig9 (A8)

Aliter (A9)

Alma (A9)

Arissanae (A9)

Beemo (A9)

BogosyJay (A9)

Catalina (A9)

Charm (A9)

Conquerage (A9)

Darrell (A9)

DreamTeam1 (A9)

EdogawaKiddo (A9)

Eidsmoe (A9)

Elephantoon (A9)

EmyBug (A9)

ExplosioNervosa (A9)

Fayely (A9)

Hanray (A9)

Holex (A9)

HortumSL17 (A9)

Jiawan (A9)

Keziacharles14 (A9)

Lilleskat (A9)

LoneWolf (A9)

Maminiaina (A9)

Myxus (A9)

Onglai (A9)

PackMan (A9)

Phaeder (A9)

Phonnegut (A9)

Pioneer (A9)

Priya (A9)

Qobbit (A9)

Rahalelujah (A9)

RyeScarlet (A9)

Sachima (A9)

Scherzo (A9)

SheaKeira (A9)

Spouty (A9)

Toaka (A9)

Tubs (A9)

Ugenie5 (A9)

Vanisoa (A9)

Yecey3 (A9)

Annotating InstitutionUnknown or unassigned
Annotation StatusIn GenBank
MorphotypeSiphoviridae
Number of Genes77
Number of tRNAs5
Number of tmRNAs0
Has been Phamerated?Yes
Gene List

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D29_1

D29_2

D29_3

D29_4
(HNH endonuclease)

D29_5

D29_6
(minor tail protein)

D29_7 — tRNA
(tRNA-Asn(gtt))

D29_8 — tRNA
(tRNA-Trp(cca))

D29_9 — tRNA
(tRNA-Gln(ctg))

D29_9.1 — tRNA
(tRNA-Glu(ctc))

D29_9.2 — tRNA
(tRNA-Tyr(gta))

D29_10
(lysin A)

D29_11
(holin)

D29_12
(lysin B)

D29_13
(terminase)

D29_14
(portal protein)

D29_15
(capsid maturation protease)

D29_16
(scaffolding protein)

D29_17
(major capsid protein)

D29_18

D29_19
(head-to-tail adaptor)

D29_19.1

D29_20
(head-to-tail stopper)

D29_21

D29_22
(tail terminator)

D29_23
(major tail protein)

D29_24
(tail assembly chaperone)

D29_25
(tail assembly chaperone)

D29_26
(tape measure protein)

D29_27
(minor tail protein)

D29_28
(minor tail protein)

D29_29

D29_30

D29_31
(minor tail protein)

D29_32

D29_32.1

D29_33
(tyrosine integrase)

D29_34.1

D29_36
(excise)

D29_36.1
(deoxycytidylate deaminase)

D29_38

D29_39

D29_41

D29_41.1

D29_42

D29_43.1

D29_44
(DNA polymerase I)

D29_44.1

D29_46
(helix-turn-helix DNA binding protein)

D29_48
(ThyX-like thymidylate synthase)

D29_49

D29_50
(ribonucleotide reductase)

D29_51

D29_52

D29_53
(DNA binding protein)

D29_53.1

D29_54
(phosphoesterase)

D29_55

D29_56
(NrdH-like glutaredoxin)

D29_57
(DNA primase)

D29_58
(DNA primase)

D29_59
(endonuclease VII)

D29_59.1

D29_59.2
(esterase)

D29_61
(DprA-like DNA processing chain A)

D29_62

D29_63

D29_64

D29_65
(DnaB-like dsDNA helicase)

D29_66
(phosphoesterase)

D29_66.1

D29_68

D29_68.1

D29_69
(Cas4 exonuclease)

D29_70

D29_82.1

D29_82.2

D29_84

D29_86

D29_87

D29_88

D29_89

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionAF022214
Refseq NumberNC_001900
Published in PaperFord ME et al 1998, Journal of molecular biology: Genome structure of mycobacteriophage D29: implications for phage evolution.
Archiving Info
Archiving status Archived
Pitt Freezer Box# 1
Pitt Freezer Box Grid# E10
Available Files
Plaque PictureDownload
Virtual Digest PictureDownload
EM PictureDownload
Final DNAMaster FileDownload
GenBank File for PhameratorDownload