The Actinobacteriophage Database

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Detailed Information for Phage Grum1
Discovery Information
Isolation Host	Mycobacterium smegmatis mc²155
Found By	Sandra Connors
Year Found	2013
Location Found	Cape Elizabeth, ME USA
Finding Institution	Southern Maine Community College
Program	Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?	Unknown
Isolation Temperature	Not entered
GPS Coordinates	43.563700 N, 70.200000 W Map
Sequencing Information
Sequencing Complete?	Yes
Date Sequencing Completed	Dec 10, 2013
Sequencing Facility	Pittsburgh Bacteriophage Institute
Shotgun Sequencing Method	Illumina
Sequencer Used	Illumina MiSeq
Read Type	Single-end reads
Read Length	150 bp
Approximate Shotgun Coverage	4437
Genome length (bp)	50883
Character of genome ends	3' Sticky Overhang
Overhang Length	10 bases
Overhang Sequence	CGGGTGGTAA
GC Content	64.1%
Fasta file available?	Yes: Download fasta file
Characterization
Cluster	A
Subcluster	A3
Cluster Life Cycle	Temperate
Other Cluster Members	Click to View Chargerpower (None) Abbyshoes (A1) Abrogate (A1) Acme (A1) Adahisdi (A1) Aeneas (A1) AFIS (A1) Agaliana (A1) Ajay (A1) Alsfro (A1) Altman (A1) Alvin (A1) Anglerfish (A1) Applejack (A1) Arcanine (A1) Arlo (A1) Ashballer (A1) Atkinbua (A1) BaconJack (A1) Barriga (A1) BarrowTuph (A1) Beatrix (A1) BeesKnees (A1) Bethlehem (A1) Bexan (A1) Big3 (A1) Bigchungi (A1) Bigfoot (A1) BigMau (A1) BigPaolini (A1) BillKnuckles (A1) Bircsak (A1) Blue (A1) BluSpix (A1) Bob3 (A1) Bones (A1) BPBiebs31 (A1) Briton15 (A1) Bruns (A1) Burton (A1) Buttons (A1) Bxb1 (A1) CactusRose (A1) Carlyle (A1) Chanagan (A1) Ciao (A1) ConceptII (A1) Corvo (A1) Crispicous1 (A1) Cueylyss (A1) DD5 (A1) Dexes (A1) Doom (A1) Dreamboat (A1) DreamCatcher (A1) DrFeelGood (A1) Dulcie (A1) Dussy (A1) Dynamix (A1) Edtherson (A1) EnzoK (A1) Espresso (A1) Euphoria (A1) Eyeball (A1) Fajezeel (A1) Fascinus (A1) Fenn (A1) Forsytheast (A1) Francis47 (A1) Froghopper (A1) Fushigi (A1) GageAP (A1) Gandalf20 (A1) GMonster (A1) Gompeii16 (A1) Graduation (A1) GrecoEtereo (A1) Greg (A1) Gwendoluna (A1) Gyzlar (A1) Hami1 (A1) HanShotFirst (A1) HarryOW (A1) Hermia (A1) HermioneGrange (A1) Homines (A1) Hope4ever (A1) Ichabod (A1) IgnatiusPatJac (A1) ILeeKay (A1) Inyanga (A1) Iqorha (A1) JackSparrow (A1) Jasper (A1) JC27 (A1) Jerm2 (A1) Jorgensen (A1) JuliaChild (A1) Kanely (A1) KBG (A1) Kenmech (A1) Killigrew (A1) KSSJEB (A1) Kugel (A1) Kykar (A1) KyMonks1A (A1) Lamina13 (A1) Lesedi (A1) Levia (A1) Licorice (A1) LilBib (A1) Lockley (A1) Lopton (A1) LunarLander (A1) Magnar (A1) Magnito (A1) Makemake (A1) Manatee (A1) Marcell (A1) Marchy (A1) Marco3 (A1) Marge (A1) Maroc7 (A1) Marsha (A1) MaryBeth (A1) McGuire (A1) McSinger (A1) MetalQZJ (A1) Michley (A1) Mkhuseli (A1) Molly (A1) Monet (A1) Moose (A1) MPlant7149 (A1) MrGordo (A1) Mryolo (A1) Mule (A1) Museum (A1) Naira (A1) NEHalo (A1) Nerujay (A1) Nhonho (A1) Niza (A1) Norz (A1) Ohno789 (A1) Oogway (A1) PacerPaul (A1) Papez (A1) Paphu (A1) Paraselene (A1) Pari (A1) Parliament (A1) PascalRango (A1) PattyP (A1) Payneful (A1) Pelly (A1) Pepe (A1) Perseus (A1) Peterson (A1) Petp2012 (A1) Petruchio (A1) PherrisBueller (A1) PhineBark (A1) Phlippers (A1) PhrostyMug (A1) PinkPlastic (A1) Pinto (A1) Pippin (A1) Pita2 (A1) ProMouse (A1) PSullivan (A1) QTRlifeCrisis (A1) Raid (A1) Rajelicia (A1) Rhynn (A1) RidgeCB (A1) Ringer (A1) Rohr (A1) Rubeus (A1) Rufus (A1) Ruotula (A1) Rutherferd (A1) Sagefire (A1) Sandaddy (A1) Sanya (A1) SarFire (A1) Scowl (A1) Seabiscuit (A1) Seanderson (A1) ShortQueendom (A1) Sibs6 (A1) SkiPole (A1) Slagathor (A1) Smairt (A1) Smeagol (A1) Snazzy (A1) Solon (A1) Sorpresa (A1) SpikeBT (A1) Squee (A1) StewieG (A1) STLscum (A1) StrongArm (A1) Sumter (A1) Sunshine924 (A1) SwissCheese (A1) Switzer (A1) Swole (A1) Target (A1) Tasp14 (A1) Teodoridan (A1) TheloniousMonk (A1) Thor (A1) Topgun (A1) Tote (A1) Traft412 (A1) Treddle (A1) Tripl3t (A1) Trouble (A1) Turj99 (A1) TwoPeat (A1) U2 (A1) Violet (A1) Watermelon (A1) Wheeler (A1) Wilkins (A1) Zeeculate (A1) Zephyr (A1) Zeuska (A1) Chupacabra (A10) DontArgue (A10) Drake94 (A10) DustyMartin (A10) Eaglepride (A10) Edison31 (A10) Goose (A10) KittenMittens (A10) Kristoff (A10) OKCentral2016 (A10) PeaceMeal1 (A10) Poompha (A10) Rebeuca (A10) RhynO (A10) Rowdy (A10) Severus (A10) Shapes (A10) Topanga (A10) Trike (A10) Twister (A10) WalterMcMickey (A10) Aneem (A11) Bachome (A11) Bowtie (A11) Bud (A11) Ebony (A11) Et2Brutus (A11) Fibonacci (A11) Flaverint (A11) Gilberta (A11) Hutc2 (A11) Insomnia (A11) Jabith (A11) Joselito (A11) Lucivia (A11) Mabel (A11) MaCh (A11) Mulciber (A11) Munch (A11) Orange (A11) Petersenfast (A11) Salz (A11) Sham4 (A11) Snape (A11) Timothy (A11) TinyTimmy (A11) DarthPhader (A12) Pharaoh (A12) Refuge (A12) Steamy (A12) Zimmer (A12) Phlei (A13) Gail (A14) Jeeves (A14) Luchador (A14) SororFago (A14) Sunhee (A14) Anaysia (A15) Anon (A15) Battleship (A15) Boohoo (A15) DekHockey33 (A15) Epsocamisio (A15) JSwag (A15) KatherineG (A15) LastResort (A15) Looper (A15) MinecraftSteve (A15) Nebulosus (A15) Nedarya (A15) Oofda (A15) ReMo (A15) Remus (A15) Rosalind (A15) ShayRa (A15) Soups (A15) Strosahl (A15) Switzerland (A15) Waits (A15) Warrior24 (A15) EagleEye (A16) Lucyedi (A16) PainterBoy (A16) 40AC (A17) MyraDee (A18) Kimona (A19) 20ES (A2) AbbyPaige (A2) Acolyte (A2) Adzzy (A2) Agape74 (A2) AN3 (A2) AN9 (A2) ANI8 (A2) AnnaL29 (A2) Anselm (A2) ArcherNM (A2) BabyBack (A2) Bactobuster (A2) Baehexic (A2) BengiVuitton (A2) Benvolio (A2) BiancaTri92 (A2) BobSwaget (A2) Bradman (A2) Bugsy (A2) Caraxes (A2) Centaur (A2) Changeling (A2) Che12 (A2) ChipMunk (A2) Colin (A2) CRB1 (A2) Crucio (A2) D29 (A2) D32 (A2) Dalmatian (A2) DBQu4n (A2) Deloris (A2) Dignity (A2) Drake55 (A2) DudeLittle (A2) Duplo (A2) Echild (A2) Equemioh13 (A2) EvilGenius (A2) EZMoney23 (A2) Fameo (A2) FiringLine (A2) First (A2) Flare16 (A2) GaugeLDP (A2) Georgie2 (A2) Gratitude (A2) HarryHoudini (A2) Heffalump (A2) Herbertwm (A2) IronMan (A2) Iwokeuplikedis (A2) Jaan (A2) Jerm (A2) JoshKayV (A2) Journey13 (A2) Jsquared (A2) Kalpine (A2) Kerberos (A2) KingCyrus (A2) Koduck (A2) L5 (A2) LadyBird (A2) Landor (A2) Larenn (A2) Leogania (A2) Leviathan (A2) LilTurb (A2) LionsBait (A2) Lokk (A2) Loser (A2) MajorMajor (A2) Malec (A2) MiculUcigas (A2) Miko (A2) MissWhite (A2) Naji (A2) NaSiaTalie (A2) NicoleTera (A2) NothingSpecial (A2) Odin (A2) Ph8s (A2) Phaded (A2) Piro94 (A2) Pomar16 (A2) Power (A2) Pukovnik (A2) QueenB2 (A2) QueenBeesly (A2) Quokka (A2) Rachaly (A2) RedRock (A2) Retro23 (A2) SemperFi (A2) Serenity (A2) Sknot (A2) Smeagan (A2) SnapTap (A2) StarStuff (A2) Superchunk (A2) SweetiePie (A2) SwirlSquare (A2) TarsusIV (A2) Terrific (A2) TipsytheTRex (A2) Tomathan (A2) Travvers (A2) Tristan (A2) Trixie (A2) Trooper (A2) Turbido (A2) Updawg (A2) VA6 (A2) VC3 (A2) WeiHuaDA (A2) Whabigail7 (A2) WideWale (A2) XianYue (A2) Anthony (A20) FatCactus (A20) Kinmap (A21) ACFishhook (A3) Aglet (A3) AgronaGT15 (A3) Anubis (A3) AugsMagnumOpus (A3) BabyJohn (A3) BabyRay (A3) Beauxregard13 (A3) Bigflo (A3) BlueBird (A3) BreSam8 (A3) Bugatti (A3) BuzzBuzz (A3) Bxz2 (A3) Calvinny (A3) Caviar (A3) Chiqui (A3) Colbster (A3) Cullens (A3) DaHudson (A3) Daishi (A3) Dieselweasel (A3) DropBear (A3) EpicPhail (A3) Farber (A3) Fernando (A3) Fred313 (A3) Gemma (A3) GingkoMaracino (A3) Giroux (A3) Grif (A3) Groupthink (A3) Grub (A3) Grum1 (A3) GtownJaz (A3) HashRod (A3) HaveUMetTed (A3) Heathen (A3) HelDan (A3) Heliosoles (A3) Hercules11 (A3) Hookmount (A3) Idleandcovert (A3) Isca (A3) JenCasNa (A3) JeppNRM (A3) JF2 (A3) JF4 (A3) JHC117 (A3) Jobu08 (A3) Kachowdy (A3) KADY (A3) Kalb97 (A3) Kalnoky (A3) Lambert1 (A3) LarryKay (A3) LBerry (A3) Lilith (A3) Louie6 (A3) Lowa (A3) LugYA (A3) MA5 (A3) MadMarie (A3) Mainiac (A3) Malinsilva (A3) Manu (A3) Marchesa (A3) Margo (A3) Marie (A3) Marius (A3) MarQuardt (A3) Methuselah (A3) Microwolf (A3) Misomonster (A3) MK4 (A3) MoneyMay (A3) MuchMore (A3) Noella (A3) Norbert (A3) OlanP (A3) Ollie (A3) P28Green (A3) Panamaxus (A3) Pawn (A3) Pembroke (A3) Penny1 (A3) PGHhamlin (A3) Phantastic (A3) PhishRPhriends (A3) Phoebe (A3) Phoxy (A3) Phranny (A3) Pistachio (A3) Pocahontas (A3) Popcicle (A3) PotatoSplit (A3) Puppy (A3) PurpleHaze (A3) QuinnKiro (A3) Reba (A3) ResDef (A3) Rockstar (A3) Rummer (A3) Sabia (A3) Sabinator (A3) SaturnRing (A3) Scout (A3) Snickers (A3) SoilDragon (A3) Soshari (A3) SoYo (A3) Spike509 (A3) Stagni (A3) StepMih (A3) Taurus (A3) Texage (A3) Tiffany (A3) TinyPebbles (A3) TNguyen7 (A3) Todacoro (A3) Veracruz (A3) Vix (A3) Watson (A3) Wooldri (A3) Zetzy (A3) AbbysRanger (A4) Abdiel (A4) Achebe (A4) Albee (A4) Alberto7 (A4) Annyong (A4) Arturo (A4) AvatarAhPeg (A4) Avle17 (A4) Baby16 (A4) Backyardigan (A4) Badger (A4) BangNhom (A4) Bartimeaus (A4) BellusTerra (A4) Blackmoor (A4) Bombshell (A4) Broseidon (A4) Bruiser (A4) BubbleTrouble (A4) Bumblebee11 (A4) Burger (A4) Caelakin (A4) Camperdownii (A4) CentreCat (A4) Cerulean (A4) ChampagnePapi (A4) Chaph (A4) Cici (A4) Cindaradix (A4) Cintron (A4) Citius (A4) Clarenza (A4) Cocoaberry (A4) Commander (A4) Connomayer (A4) Datway (A4) Deano (A4) Dhanush (A4) DirtyDunning (A4) Druantia (A4) Eagle (A4) Eapen (A4) Eris (A4) Eros (A4) Eurydice (A4) Florean (A4) Flux (A4) Funston (A4) Gadost (A4) HamSlice (A4) Happiness (A4) Holli (A4) Houdini22 (A4) Huxley (A4) Iceman (A4) ICleared (A4) Iracema64 (A4) Jaykayelowell (A4) JetBlade (A4) JoongJeon (A4) Kampy (A4) Katalie136 (A4) KFPoly (A4) Kingmustik0402 (A4) Koan (A4) Koreni (A4) Kratark (A4) Kremtemulon (A4) Kyee (A4) LappelDuVide (A4) Lemur (A4) LeoAvram (A4) LHTSCC (A4) LittleB (A4) LittleGuy (A4) LochMonster (A4) Lorenzo (A4) Lunsford (A4) Maverick (A4) Maxo (A4) Mayonnaise (A4) Mazhar510 (A4) Medusa (A4) MeeZee (A4) Melvin (A4) Millski (A4) Miramae (A4) Morpher26 (A4) Morrow (A4) Mundrea (A4) Nebs (A4) Nemo27 (A4) Noelle (A4) NorthStar (A4) NotAPhaseMom (A4) Nyxis (A4) Obama12 (A4) Ohfah (A4) OKaNui (A4) Palestino (A4) Peaches (A4) Perplexer (A4) PeterPeter (A4) PetiteSangsue (A4) Phacado (A4) Phelipe (A4) Phighter1804 (A4) Phontbonne (A4) Pipcraft (A4) Polymorphads (A4) Pumbaa (A4) Relief (A4) Romney (A4) Roosevelt (A4) Rosa24 (A4) Ruin (A4) Sabertooth (A4) Scamp (A4) SenorClean (A4) Shaka (A4) SheldonCooper (A4) Shygu2 (A4) Skipitt (A4) Sparxx (A4) Spino (A4) Stasia (A4) Stink (A4) Taquarus (A4) Thanksgivukkah (A4) TinaFeyge (A4) Tinybot (A4) TiroTheta9 (A4) TroyPia (A4) TygerBlood (A4) Ulysses (A4) Wander (A4) Wilbur (A4) Wile (A4) Wizard007 (A4) Xena (A4) YoSam321 (A4) AgentM (A5) Airmid (A5) Aragog (A5) Archetta (A5) Benedict (A5) Bluefalcon (A5) Bonamassa (A5) Chadwick (A5) Conspiracy (A5) Coog (A5) Cuco (A5) Discoknowium (A5) Dublin (A5) ElTiger69 (A5) ForGetIt (A5) George (A5) Ghoulboy (A5) HuhtaEnerson15 (A5) Jabiru (A5) Jovo (A5) Lev2 (A5) LittleCherry (A5) MarysWell (A5) Micasa (A5) Midas2 (A5) Milcery (A5) Naca (A5) PetterN (A5) Phlorence (A5) PickleBack (A5) Prinashe11 (A5) Scorpia (A5) Swirley (A5) SydNat (A5) Tarynearal (A5) Theia (A5) Tiger (A5) Twigg (A5) UnionJack (A5) Zolita (A5) Artemis2UCLA (A6) BABullseye (A6) BlessJoy (A6) Blinn1 (A6) Blue7 (A6) Candra (A6) Chartreuse (A6) CloudWang3 (A6) Cookiedough (A6) DaVinci (A6) Dorothea (A6) EricB (A6) Garak (A6) Gladiator (A6) GreedyLawyer (A6) Gruunaga (A6) Hammer (A6) Helmet (A6) Hexamo (A6) Hoot (A6) Indra (A6) Isiphiwo (A6) Jeffabunny (A6) JewelBug (A6) Jordennis (A6) Kazan (A6) Kipper29 (A6) Koko (A6) Lilbunny (A6) McFly (A6) Neeharika16 (A6) Newrala (A6) Pmask (A6) Polyphemus (A6) Priamo (A6) Rifter (A6) Roksolana (A6) SmellyB (A6) SuperAwesome (A6) SuperCallie99 (A6) Temprado (A6) ToneTone (A6) Tucker (A6) VohminGhazi (A6) Wiks (A6) WunderPhul (A6) Yokurt (A6) Zaka (A6) Zulu (A6) DroogsArmy (A7) FlyCatcher (A7) HINdeR (A7) Sheen (A7) Timshel (A7) Toro (A7) Astro (A8) Danforth (A8) Dixon (A8) Expelliarmus (A8) Groundhog (A8) NearlyHeadless (A8) Phillis (A8) Roary (A8) Saintus (A8) Smeadley (A8) Stephig9 (A8) Aliter (A9) Alma (A9) Arissanae (A9) Beemo (A9) BogosyJay (A9) Catalina (A9) Charm (A9) Conquerage (A9) Darrell (A9) DreamTeam1 (A9) EdogawaKiddo (A9) Eidsmoe (A9) Elephantoon (A9) EmyBug (A9) ExplosioNervosa (A9) Fayely (A9) Hanray (A9) Holex (A9) HortumSL17 (A9) Jiawan (A9) Keziacharles14 (A9) Lilleskat (A9) LoneWolf (A9) Maminiaina (A9) Myxus (A9) Onglai (A9) PackMan (A9) Phaeder (A9) Phonnegut (A9) Pioneer (A9) Priya (A9) Qobbit (A9) Rahalelujah (A9) RyeScarlet (A9) Sachima (A9) Scherzo (A9) SheaKeira (A9) Spouty (A9) Toaka (A9) Tubs (A9) Ugenie5 (A9) Vanisoa (A9) Yecey3 (A9)
Annotating Institution	University of the Sciences (now St. Joseph's Univ)
Annotation Status	In GenBank
Morphotype	Siphoviridae
Number of Genes	90
Number of tRNAs	3
Number of tmRNAs	0
Has been Phamerated?	Yes
Gene List	Click to View Grum1_1 (HNH endonuclease) Grum1_2 (minor tail protein) Grum1_3 Grum1_4 (minor tail protein) Grum1_5 Grum1_6 Grum1_7 — tRNA Grum1_8 — tRNA Grum1_9 — tRNA Grum1_10 Grum1_11 (lysin A) Grum1_12 (lysin B) Grum1_13 (terminase) Grum1_14 (portal protein) Grum1_15 (capsid maturation protease) Grum1_16 (scaffolding protein) Grum1_17 (major capsid protein) Grum1_18 Grum1_19 (head-to-tail adaptor) Grum1_20 Grum1_21 (head-to-tail stopper) Grum1_22 Grum1_23 (tail terminator) Grum1_24 (major tail protein) Grum1_25 (tail assembly chaperone) Grum1_26 (tail assembly chaperone) Grum1_27 (tape measure protein) Grum1_28 (minor tail protein) Grum1_29 (minor tail protein) Grum1_30 (minor tail protein) Grum1_31 (minor tail protein) Grum1_32 (minor tail protein) Grum1_33 (minor tail protein) Grum1_34 Grum1_35 Grum1_36 (integrase) Grum1_37 Grum1_38 (helix-turn-helix DNA binding domain protein) Grum1_39 Grum1_40 Grum1_41 (nucleoside deaminase) Grum1_42 Grum1_43 Grum1_44 Grum1_45 Grum1_46 Grum1_47 Grum1_48 (DNA polymerase I) Grum1_49 Grum1_50 (MerR-like HTH DNA binding protein) Grum1_51 Grum1_52 (ThyX-like thymidylate synthase) Grum1_53 Grum1_54 (ribonucleotide reductase) Grum1_55 Grum1_56 Grum1_57 Grum1_58 (metallophosphoesterase) Grum1_59 Grum1_60 Grum1_61 Grum1_62 (DNA primase) Grum1_63 (DNA primase) Grum1_64 (endonuclease VII) Grum1_65 (esterase) Grum1_66 Grum1_67 Grum1_68 (DnaB-like dsDNA helicase) Grum1_69 Grum1_70 Grum1_71 Grum1_72 Grum1_73 Grum1_74 Grum1_75 Grum1_76 (Cas4 exonuclease) Grum1_77 Grum1_78 (immunity repressor) Grum1_79 Grum1_80 Grum1_81 Grum1_82 Grum1_83 Grum1_84 Grum1_85 Grum1_86 Grum1_87 Grum1_88 Grum1_89 Grum1_90 Grum1_91 Grum1_92 Grum1_93
Submitted Annotation in DNA Master Format	Download
Submitted Minimal DNA Master File	Download
Author List	Download
Annotation Cover Sheet	Download
Publication Info
Uploaded to GenBank?	Yes
GenBank Accession	MH399776
Refseq Number	None yet
Published in Paper	Pope, Bowman, Russell, et al 2015, eLIFE: Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity
Archiving Info
Archiving status	Archived
SEA Lysate Titer	1x10^9
Pitt Freezer Box#	1
Pitt Freezer Box Grid#	A9
Available Files
EM Picture	Download
GenBank File for Phamerator	Download

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