Mycobacterium phage Jobu08
Know something about this phage that we don't? Modify its data.
Recently Added Phages
Juji Kangaroo Quibble SeptumDuo FilipManilaRecently Modified Phages
WaddleDee Liltimmytim CosmicLatte Touchdown CatPhinRecently Finished Phages
Liberone (GI) Neuvillette (FR) FatCactus (A20) Rossetti (L2) RoseMarie (None)Mycobacterium phage Jobu08
Know something about this phage that we don't? Modify its data.
| Detailed Information for Phage Jobu08 | |
| Discovery Information | |
| Isolation Host | Mycobacterium smegmatis mc²155 |
| Found By | Amy Nusbaum |
| Year Found | 2011 |
| Location Found | Pullman, WA USA |
| Finding Institution | Washington State University |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | Yes |
| Isolation Temperature | Not entered |
| GPS Coordinates | 46.440099 N, 117.094886 W Map |
| Discovery Notes | Discovered at a depth of 1 cm at 69° F. The area was urban and was fairly moist at the time of collection. |
| Sequencing Information | |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Jan 29, 2012 |
| Sequencing Facility | Virginia Commonwealth University Nucleic Acids Research Facilities |
| Shotgun Sequencing Method | 454 |
| Sequencer Used | 454 Genome Sequencer FLX |
| Approximate Shotgun Coverage | 140 |
| Genome length (bp) | 50679 |
| Character of genome ends | 3' Sticky Overhang |
| Overhang Length | 10 bases |
| Overhang Sequence | CGGGTGGTAA |
| GC Content | 64.0% |
| Fasta file available? | Yes: Download fasta file |
| Characterization | |
| Cluster | A |
| Subcluster | A3 |
| Cluster Life Cycle | Temperate |
| Other Cluster Members | |
| Annotating Institution | Unknown or unassigned |
| Annotation Status | In GenBank |
| Plaque Notes | Most plaques are approximately 2mm, though there are some of smaller diameter. It is a temperate phage. |
| Morphotype | Siphoviridae |
| Number of Genes | 85 |
| Number of tRNAs | 3 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List | |
| Publication Info | |
| Uploaded to GenBank? | Yes |
| GenBank Accession | KC661281 |
| Refseq Number | NC_021535 |
| Published in Paper | Pope, Bowman, Russell, et al 2015, eLIFE: Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity |
| Archiving Info | |
| Archiving status | Archived |
| SEA Designator | 2011WASUjobu08ATN |
| Pitt Freezer Box# | 30 |
| Pitt Freezer Box Grid# | 14 |
| Available Files | |
| Plaque Picture | Download |
| EM Picture | Download |