| Detailed Information for Phage LBerry |
| Discovery Information |
| Isolation Host | Mycobacterium smegmatis mc²155 |
| Found By | Nathan Berry and Kathleen Cornely |
| Year Found | 2022 |
| Location Found | Henrietta, NY United States |
| Finding Institution | Providence College |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | Yes |
| Isolation Temperature | 37°C |
| GPS Coordinates | 43.058056 N, 77.650556 W Map |
| Discovery Notes | The sample was collected outside of a hotel in Henrietta, New York at noon. The weather was 56 degrees Fahrenheit (13.3 deg Celsius) and it was mostly cloudy. The soil was mostly dry and pretty clumpy; it was collected under a layer of mulch. |
| Naming Notes | This phage is named after my family surname, "Berry". There is a joke in my family of LBs as many of the members have a first name that starts with L. |
| Sequencing Information |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Feb 7, 2023 |
| Sequencing Facility | NC State Genomic Sciences Laboratory |
| Shotgun Sequencing Method | Illumina Sequencing |
| Approximate Shotgun Coverage | 276 |
| Genome length (bp) | 50965 |
| Character of genome ends | 3' Sticky Overhang |
| Overhang Length | 10 bases |
| Overhang Sequence | CGGGTGGTAA |
| GC Content | 64.0% |
| Fasta file available? | Yes: Download fasta file |
| Characterization |
| Cluster | A |
| Subcluster | A3 |
| Cluster Life Cycle | Temperate |
| Other Cluster Members |
|
| Annotating Institution | Providence College |
| Annotation Status | In GenBank |
| Morphotype | Siphoviridae |
| Number of Genes | 92 |
| Number of tRNAs | 3 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List |
|
| Submitted Annotation in DNA Master Format | Download |
| Submitted Minimal DNA Master File | Download |
| Author List | Download |
| Annotation Cover Sheet | Download |
| Publication Info |
| Uploaded to GenBank? | Yes |
| GenBank Accession | OR725491 |
| Refseq Number | None yet |
| Archiving Info |
| Archiving status |
Archived |
| Pitt Freezer Box# |
162 |
| Pitt Freezer Box Grid# |
F11 |
| Available Files |
| GenBank File for Phamerator | Download |