Detailed Information for Phage Phaded |
Discovery Information |
Isolation Host | Mycobacterium smegmatis mc²155 |
Found By | Sai Kaushik Yeturu |
Year Found | 2017 |
Location Found | Providence, RI USA |
Finding Institution | Brown University |
Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
From enriched soil sample? | Yes |
Isolation Temperature | 18°C |
GPS Coordinates | 41.823833 N, 71.403537 W Map |
Discovery Notes | This phage was discovered at a depth of 2 inches below a grassy surface in moist conditions with an atmospheric temperature of 18.3 degrees C on 9/19/17. The phage was isolated through enrichment on 9/20/17. |
Naming Notes | The name of this phage stems from the colloquial use of the term "Faded" in modern culture and "Ph" from Phage. |
Sequencing Information |
Sequencing Complete? | Yes |
Date Sequencing Completed | Jan 18, 2018 |
Sequencing Facility | Pittsburgh Bacteriophage Institute |
Shotgun Sequencing Method | Illumina |
Approximate Shotgun Coverage | 735 |
Genome length (bp) | 53598 |
Character of genome ends | 3' Sticky Overhang |
Overhang Length | 10 bases |
Overhang Sequence | CGGTCGGTTA |
GC Content | 63.1% |
Fasta file available? | Yes: Download fasta file |
Characterization |
Cluster | A |
Subcluster | A2 |
Cluster Life Cycle | Temperate |
Other Cluster Members |
|
Annotating Institution | Rockland Community College |
Annotation Status | In GenBank |
Plaque Notes | The plaques are Turbid and have a concentric ring that is additionally turbid. |
Morphotype | Siphoviridae |
Number of Genes | 88 |
Number of tRNAs | 1 |
Number of tmRNAs | 0 |
Has been Phamerated? | Yes |
Gene List |
|
Submitted Annotation in DNA Master Format | Download |
Submitted Minimal DNA Master File | Download |
Author List | Download |
Annotation Cover Sheet | Download |
Publication Info |
Uploaded to GenBank? | Yes |
GenBank Accession | MN703408 |
Refseq Number | None yet |
Archiving Info |
Archiving status |
Archived |
Pitt Freezer Box# |
54 |
Pitt Freezer Box Grid# |
B7 |
Available Files |
Final DNAMaster File | Download |
GenBank File for Phamerator | Download |