Mycobacterium phage Sibs6
Know something about this phage that we don't? Modify its data.
Recently Added Phages
PhloydMan Floam Temu MiddleBid DescartesRecently Modified Phages
PhloydMan Floam Swedishphish Goobert Blorp25Recently Finished Phages
Liberone (GI) Neuvillette (FR) FatCactus (A20) Rossetti (L2) RoseMarie (None)Mycobacterium phage Sibs6
Know something about this phage that we don't? Modify its data.
| Detailed Information for Phage Sibs6 | |
| Discovery Information | |
| Isolation Host | Mycobacterium smegmatis mc²155 |
| Found By | Sabrina Tarchione |
| Year Found | 2017 |
| Location Found | Johnston, IA USA |
| Finding Institution | Northwestern College |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | No |
| Isolation Temperature | Not entered |
| GPS Coordinates | 41.6597 N, 93.7207 W Map |
| Discovery Notes | Soil sample was collected by Courtney Mithelman. The soil was wet and taken slightly below surface level. The temperature at the time of sampling was 48 degrees Fahrenheit and rainy. |
| Naming Notes | This virus will be named in honor of my family. There are six members of my family and my sibling's names are Isabelle, Sophie, and Benjamin. Their first initial and mine will be combined to created a name. It will be in all capital letter because this is exciting! |
| Sequencing Information | |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Jul 7, 2017 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Illumina |
| Sequencer Used | Illumina MiSeq |
| Read Type | Single-end reads |
| Read Length | 150 bp |
| Approximate Shotgun Coverage | 1585 |
| Genome length (bp) | 50210 |
| Character of genome ends | 3' Sticky Overhang |
| Overhang Length | 10 bases |
| Overhang Sequence | CGGATGGTAA |
| GC Content | 63.8% |
| Sequencing Notes | Around position 43620 there is a run of 5 Cs, but in about 41% of reads, there are 6 Cs in this position. |
| Fasta file available? | Yes: Download fasta file |
| Characterization | |
| Cluster | A |
| Subcluster | A1 |
| Cluster Life Cycle | Temperate |
| Other Cluster Members | |
| Annotating Institution | Northwestern College |
| Annotation Status | In GenBank |
| Plaque Notes | My plaque has an inverse halo. Consisting of a cloudy center and a clear center region. The plaque diameter has ranged in size throughout this process. Variables to credit this are: age of host bacterium, age of agar, agar composition, and time spent in buffer. |
| Morphotype | Siphoviridae |
| Number of Genes | 95 |
| Number of tRNAs | 0 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List | |
| Submitted Annotation in DNA Master Format | Download |
| Submitted Minimal DNA Master File | Download |
| Author List | Download |
| Annotation Cover Sheet | Download |
| Publication Info | |
| Uploaded to GenBank? | Yes |
| GenBank Accession | MH576974 |
| Refseq Number | None yet |
| Archiving Info | |
| Archiving status | Archived |
| Pitt Freezer Box# | 72 |
| Pitt Freezer Box Grid# | H8 |
| Available Files | |
| Plaque Picture | Download |
| EM Picture | Download |
| GenBank File for Phamerator | Download |