The Actinobacteriophage Database

Mycobacterium phage Alexphander

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Detailed Information for Phage Alexphander
Discovery Information
Isolation Host	Mycobacterium smegmatis mc²155
Found By	Daniel Shen
Year Found	2016
Location Found	Westwood, CA USA
Finding Institution	University of California, Los Angeles
Program	Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?	No
Isolation Temperature	30°C
GPS Coordinates	34.075071 N, 118.450961 W Map
Discovery Notes	Phage Alexphander was isolated from soil taken from compost heap in the upper garden of the UCLA recreation center. Phage was isolated via direct plating at 30°C. Initial characterization performed by Daniel Shen. Annotation performed by Team PhagentX (Annie Odelson, April Johnson, Elizabeth Vanderwall, Kevin Ha) and Team The Life of Phablo (Michael Murphy, Parker Sevier, Darwin Wu.) Name of individual who collected sample: Daniel Shen Instructor: Dr. Jordan Moberg Parker Teaching Assistant: Michelle Bina Undergraduate Assistant: Sam Wu Laboratory Support: Dr. Krisanavane Reddi
Naming Notes	This phage was from the same soil sample as phage Familton.
Sequencing Information
Sequencing Complete?	Yes
Date Sequencing Completed	Dec 21, 2016
Sequencing Facility	Pittsburgh Bacteriophage Institute
Shotgun Sequencing Method	Illumina
Sequencer Used	Illumina MiSeq
Read Type	Single-end reads
Read Length	150 bp
Genome length (bp)	57734
Character of genome ends	Unknown
Overhang Length	10 bases
Overhang Sequence	CCGATGGCAT
GC Content	61.2%
Fasta file available?	Yes: Download fasta file
Characterization
Cluster	F
Subcluster	F1
Cluster Life Cycle	Temperate
Other Cluster Members	Click to View Blarby (None) Akhila (F1) Alexphander (F1) Aloeri (F1) AlpineSix (F1) ArcusAngelus (F1) Ardmore (F1) Aubs (F1) Awesomesauce (F1) Batiatus (F1) Beakin (F1) BigPhil (F1) Bipolar (F1) Blexus (F1) BlueCrab (F1) BobaPhett (F1) Bobi (F1) BodEinwohner17 (F1) Boomer (F1) Brocalys (F1) Brookers (F1) Brushbloom (F1) Bubbles123 (F1) Burwell21 (F1) BuzzLyseyear (F1) ByChance (F1) Byougenkin (F1) Cabrinians (F1) CaptainTrips (F1) Cerasum (F1) Che8 (F1) Cheesepuff (F1) Chevrolet (F1) ChickenDinner (F1) Chuckly (F1) Clifton (F1) Coco12 (F1) Corium (F1) Cornucopia (F1) Crumble (F1) DaddyRickover (F1) Daenerys (F1) Dante (F1) DaWorst (F1) DeadP (F1) Deb65 (F1) DillTech15 (F1) DirtMcgirt (F1) DLane (F1) DocMcStuffins (F1) Donkeykong (F1) Doomphist (F1) DoRead (F1) Dorothy (F1) DosHalletts (F1) DotProduct (F1) Doug (F1) Drago (F1) DRBy19 (F1) Eish (F1) EleanorGeorge (F1) EmiMonkey (F1) Emma (F1) Emmaloid (F1) Empress (F1) Enby (F1) Eradicator (F1) Estave1 (F1) Fancypants (F1) Fastidio (F1) Filuzino (F1) Firehouse51 (F1) Flathead (F1) Florinda (F1) Frankie (F1) FreddyB (F1) Fruitloop (F1) Galactic (F1) Gandalph (F1) Geralt (F1) GigiOuiOui (F1) Girafales (F1) Girr (F1) Gorge (F1) Grimmer (F1) GUmbie (F1) Guppsters (F1) Hades (F1) Hamulus (F1) Harley (F1) Hegedechwinu (F1) Hlubikazi (F1) Ibhubesi (F1) IbOuu (F1) IMpilo (F1) Inventum (F1) IrishSherpFalk (F1) JalFarm20 (F1) James (F1) Jant (F1) Jarcob (F1) Jennelsea (F1) Jinglebell (F1) Job42 (F1) JoeyJr (F1) Juice456 (F1) Juniper1 (F1) Karhdo (F1) Kenuha5 (F1) Kersh (F1) Kimberlium (F1) KingJulian (F1) KingMidas (F1) Kingsley (F1) Koella (F1) Krakatau (F1) KristaRAM (F1) LastJedi (F1) Latretium (F1) Leozinho (F1) Leperchaun (F1) LilMoolah (F1) LittleShirley (F1) Lizziana (F1) Llama (F1) Llij (F1) Lorde (F1) Lucia (F1) LunaBlu (F1) Madiba (F1) MadMen (F1) Mahavrat (F1) Mandlovu (F1) Mantra (F1) Maravista (F1) Marker (F1) Martik (F1) Mattes (F1) Medindi (F1) Melissauren88 (F1) MilanaBonita (F1) MilleniumForce (F1) MinionDave (F1) Minnie (F1) Misha28 (F1) MisterCuddles (F1) Modragons (F1) Moonbeam (F1) Mova (F1) Mozy (F1) Ms6 (F1) MulchExplorer (F1) Mutaforma13 (F1) Mwanjiwa (F1) NewHope4 (F1) Nimbo (F1) Nitzel (F1) Nivrat (F1) NormanBulbieJr (F1) Ochi17 (F1) OfUltron (F1) Ogopogo (F1) Oksu (F1) OldBen (F1) OlympiaSaint (F1) Ovechkin (F1) OwlsT2W (F1) Pacc40 (F1) Peridot (F1) Phalconet (F1) Phanphagia (F1) PHappiness (F1) Phasih (F1) Phatniss (F1) PhesterPhotato (F1) Philus (F1) PhlipPhlop (F1) Piper2020 (F1) Pippy (F1) Plumbus (F1) PMC (F1) Poenanya (F1) Polka14 (F1) Pollywog (F1) Polo2Bam (F1) PopTart (F1) Priscilla (F1) QuickMath (F1) Quico (F1) Radiance (F1) Ramsey (F1) RedBird (F1) Rialto (F1) Rita (F1) RitaG (F1) Rockne (F1) RockyHorror (F1) Royals2015 (F1) Ruby (F1) Saal (F1) Sabbb (F1) Sandalphon (F1) Sarma624 (F1) Sassafras (F1) SassyB (F1) Scottish (F1) Seabastian (F1) Seagreen (F1) SG4 (F1) Shauna1 (F1) ShiLan (F1) ShowerHandel (F1) ShroomBoi (F1) SimranZ1 (F1) SiSi (F1) Slim (F1) Sparkdehlily (F1) Spartacus (F1) Spikelee (F1) Spoonbill (F1) StAnnes (F1) Stap (F1) Starcevich (F1) Strokeseat (F1) SuperGrey (F1) SwagPigglett (F1) Taj (F1) Tchotchke (F1) TDanisky (F1) TootsiePop (F1) Tootsieroll (F1) Topiatin (F1) Totinger (F1) Tweety (F1) UncleRicky (F1) Velveteen (F1) Veteran (F1) Violac (F1) Vivum (F1) VRedHorse (F1) Wachhund (F1) Wee (F1) Whatsapiecost (F1) Whouxphf (F1) WillSterrel (F1) XFactor (F1) Yorick (F1) Zerg (F1) Zizzle (F1) Avani (F2) Che9d (F2) Demsculpinboyz (F2) Jabbawokkie (F2) SilverChicken (F2) Soul22 (F2) Yoshi (F2) Zapner (F2) Squirty (F3) LunaStella (F4) Renaud18 (F4) TChen (F4) ThetaBob (F4) Cornie (F5) Toron (F6) MulchSalad (F7)
Annotating Institution	University of California, Los Angeles
Annotation Status	In GenBank
Plaque Notes	Pinpoint, 1 mm
Morphotype	Siphoviridae
Number of Genes	104
Number of tRNAs	0
Number of tmRNAs	0
Has been Phamerated?	Yes
Gene List	Click to View Alexphander_1 (HNH endonuclease) Alexphander_2 (terminase small subunit) Alexphander_3 (terminase large subunit) Alexphander_4 (portal protein) Alexphander_5 (capsid maturation protease) Alexphander_6 (scaffolding protein) Alexphander_7 (major capsid protein) Alexphander_8 (head-to-tail adaptor) Alexphander_9 (head-to-tail stopper) Alexphander_10 Alexphander_11 (tail terminator) Alexphander_12 (major tail protein) Alexphander_13 (tail assembly chaperone) Alexphander_14 (tail assembly chaperone) Alexphander_15 (HNH endonuclease) Alexphander_16 (tape measure protein) Alexphander_17 (minor tail protein) Alexphander_18 (minor tail protein) Alexphander_19 (minor tail protein) Alexphander_20 (minor tail protein) Alexphander_21 (minor tail protein) Alexphander_22 (minor tail protein) Alexphander_23 (minor tail protein) Alexphander_24 Alexphander_25 (minor tail protein) Alexphander_26 (minor tail protein) Alexphander_27 (helix-turn-helix DNA binding domain protein) Alexphander_28 Alexphander_29 Alexphander_30 Alexphander_31 Alexphander_32 Alexphander_33 (lysin A) Alexphander_34 (lysin B) Alexphander_35 (holin) Alexphander_36 Alexphander_37 Alexphander_38 (DnaQ-like DNA polymerase III subunit) Alexphander_39 Alexphander_40 Alexphander_41 Alexphander_42 Alexphander_43 Alexphander_44 Alexphander_45 (integrase) Alexphander_46 (RelE-like toxin) Alexphander_47 (RelB-like antitoxin) Alexphander_48 Alexphander_49 Alexphander_50 (immunity repressor) Alexphander_51 (CRO protein) Alexphander_52 (antirepressor) Alexphander_53 Alexphander_54 Alexphander_55 (excise) Alexphander_56 Alexphander_57 Alexphander_58 Alexphander_59 Alexphander_60 Alexphander_61 (WhiB family transcription factor) Alexphander_62 Alexphander_63 (WhiB family transcription factor) Alexphander_64 (helix-turn-helix DNA binding domain protein) Alexphander_65 Alexphander_66 Alexphander_67 Alexphander_68 Alexphander_69 (HNH endonuclease) Alexphander_70 (DNA helicase) Alexphander_71 Alexphander_72 Alexphander_73 Alexphander_74 Alexphander_75 Alexphander_76 Alexphander_77 Alexphander_78 Alexphander_79 Alexphander_80 (MPME1 protein) Alexphander_81 Alexphander_82 Alexphander_83 Alexphander_84 Alexphander_85 Alexphander_86 Alexphander_87 Alexphander_88 Alexphander_89 Alexphander_90 Alexphander_91 Alexphander_92 Alexphander_93 Alexphander_94 (MerR-like HTH DNA binding protein) Alexphander_95 Alexphander_96 Alexphander_97 Alexphander_98 Alexphander_99 Alexphander_100 Alexphander_101 Alexphander_102 (glycosyltransferase) Alexphander_103 Alexphander_104 (glycosyltransferase)
Submitted Minimal DNA Master File	Download
Publication Info
Uploaded to GenBank?	Yes
GenBank Accession	MG962361
Refseq Number	None yet
Archiving Info
Archiving status	Archived
Pitt Freezer Box#	58
Pitt Freezer Box Grid#	F3
Available Files
Plaque Picture	Download
EM Picture	Download
GenBank File for Phamerator	Download

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